Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1957
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    31   0.24 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   1.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.7  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   6.8  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   9.0  

>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 200 ALSTDQQAKTFQDQQPRALAAHTQTNKHGRCVIEDLTRARFKKNKQ 63
           +L T Q    FQD Q +       + K G+C+++D T A   K  Q
Sbjct: 153 SLETGQPLYCFQDFQKKVHGPPALSEKPGKCILKDKTNAHVNKIPQ 198


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 225 RPVSKRPLGAINGSTSE--NIPGSTASRSRGAHAN 127
           R  SK P  + NGSTSE  +I GS +  ++GA ++
Sbjct: 120 RSASKSPKRSANGSTSEDISIEGSPSETAKGARSS 154


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 572 VFSE*QYNNELV*LPWTSAKATYANFLVTHHFWLL 676
           +FS   Y N+ V +P TSA   Y   +  +H WL+
Sbjct: 205 IFSSTLYINDFVEVPGTSAVQKYRVTMSDNHVWLI 239


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -1

Query: 222 PVSKRPLGAINGSTSENIPGSTASRSRGAHANKQTRPLC 106
           PVS  P+   NG +  N     ++       +K  R +C
Sbjct: 748 PVSHTPINVTNGESQNNSNNDPSANGAARRLHKAAREIC 786


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 435 SAPQSLSRLYIYPIYIYFAGSASVCI*SRTYYL 337
           +A ++ + LY++P  + F  S++     R YYL
Sbjct: 441 TADEAFTSLYMHPSQVGFVASSNTLSNGRVYYL 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,218
Number of Sequences: 5004
Number of extensions: 63254
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)