Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1957
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    29   3.1  
03_02_0813 - 11446138-11446155,11446782-11447027,11447172-114474...    29   4.1  
02_05_1026 - 33598275-33599561                                         29   5.4  
05_03_0317 - 12249228-12249275,12263876-12264518,12264954-122666...    28   7.1  
10_08_0919 + 21564245-21565699,21566876-21567022,21567170-215672...    28   9.4  

>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 128  FACAPREREAVDPGMFSLVDPLIAP 202
            FAC+ +E ++ DP MF LVDP  +P
Sbjct: 1060 FACSSQEEDSFDPDMF-LVDPSESP 1083


>03_02_0813 -
           11446138-11446155,11446782-11447027,11447172-11447443,
           11447544-11447595,11447700-11447777,11448860-11448919,
           11449006-11449086,11449601-11449645,11450118-11450183
          Length = 305

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 285 RGIYTHRRGSATHAFNSRGS-RFEIIYKH*LTPQNKYI 395
           +GIY    G  THA +  G+  F++ Y   L  QNK I
Sbjct: 110 QGIYISSSGDQTHAMSGNGAMTFDLEYARWLEEQNKQI 147


>02_05_1026 - 33598275-33599561
          Length = 428

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 457 LDGLDSQISPAVAI*VIYLSYIYLFCGV 374
           +DG++++ISP++   V  L+ ++  CG+
Sbjct: 24  IDGVENKISPSIVFIVAVLAIVFFVCGL 51


>05_03_0317 -
           12249228-12249275,12263876-12264518,12264954-12266682,
           12283603-12283975,12284119-12284715
          Length = 1129

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +1

Query: 193 DSAEWSLTHRPCCQPTTKAK*IICGPAETMLAVFTLTDAVQRRMLLIQEVVG-SRLYTNT 369
           D+A+    HR    P  K K  + G  E    +    D   RRM+    V   S+L T  
Sbjct: 164 DAAKTLRCHRRSIAPNRKPKVAVDGGIEARFVLLRKADTEARRMISDVSVTEYSQLLTRQ 223

Query: 370 S*PRKINIYRIDI*PR 417
           +  R   +Y  D+ PR
Sbjct: 224 AAGRANRVYDGDLPPR 239


>10_08_0919 +
           21564245-21565699,21566876-21567022,21567170-21567286,
           21567580-21568176
          Length = 771

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 155 AVDPGMFSLVDPLIAPSGRLLTGRVANQQQKLSESFVAPP 274
           A DP +  L+  L+APSG LL    A  +  L   FV PP
Sbjct: 73  AGDPALAELLASLLAPSGPLLAAVSAADRHALLR-FVFPP 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,490,864
Number of Sequences: 37544
Number of extensions: 386986
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)