Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1957
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.44 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               24   1.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   7.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 345 YYLLN*KHASLNRVGECKY-REHSLGGAT 262
           YY  N  HA L+  G C + R  +LGG T
Sbjct: 126 YYTTNESHACLSTGGSCYWPRGKNLGGTT 154


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 619 DIG*GNLCKFLGNSSFLVTC 678
           DI  GN+ K+L N S  +TC
Sbjct: 62  DISEGNIKKYLTNYSCFITC 81


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +2

Query: 587 QYNNELV*LPWTSAKATYANFLVTHHFWLLAF 682
           ++NN+++ + WTS K  +    +   +++  F
Sbjct: 95  KWNNQILHILWTSYKKVFMKDNILRQYFITFF 126


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +2

Query: 587 QYNNELV*LPWTSAKATYANFLVTHHFWLLAF 682
           ++NN+++ + WTS K  +    +   +++  F
Sbjct: 78  KWNNQILHILWTSYKKVFMKDNILRQYFITFF 109


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 234 LATRPVSKRPLGAINGSTSENIPGSTASRSRGAHANKQTR 115
           + T P+S++   A  G+ S N+P       R     K+ R
Sbjct: 235 VVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQFERKRGR 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,003
Number of Sequences: 438
Number of extensions: 4373
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)