Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1955
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    33   0.041
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.29 
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    29   0.66 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.66 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   3.5  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    27   3.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   4.7  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   4.7  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   6.2  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    25   8.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  

>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 301 SGTGVQPPTYVPSTQMPPFPIYVIPFPLPI--VPSPGSCPCYLLNPGNNGTATNEMQASS 474
           +G  V P   V  ++ PP P    P P PI  VP+  + P    NP    T +   QAS+
Sbjct: 341 AGNQVMPTPQVQGSRPPPPP----PMPAPIYNVPNVPTVPTVSPNPFLQPTFSGTSQASA 396

Query: 475 HPA 483
           HP+
Sbjct: 397 HPS 399


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +1

Query: 310 GVQPPTYVPSTQM--PPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPA 483
           G QP    P  +M  PP  +Y    PLP  P P + P    +P  +         ++ P 
Sbjct: 280 GSQPALVTPKHKMNVPPMGMY----PLPFSPLPSAAPPIPFSPNVSSHPHMAFLPATVPT 335

Query: 484 NGQSQGYAPY 513
           +    G+ PY
Sbjct: 336 HSAPPGFVPY 345



 Score = 23.4 bits (48), Expect(2) = 2.8
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 307 TGVQPP-TYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNP 432
           TG  P  T VP+   P  P  +   PLP   SP +   Y + P
Sbjct: 420 TGEMPSMTNVPAGNAPAAPGTMYTTPLPTANSPIAYQSYSVMP 462



 Score = 21.8 bits (44), Expect(2) = 2.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 454 NEMQASSHPANGQSQGYAPYGIIGFIPVVFVPYCPGN 564
           ++M   S+PA    + Y+P   +   P  FV Y   N
Sbjct: 489 SDMNVMSNPAADTLRSYSPASQVSTPPFGFVYYYDPN 525


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 110 DSQEHQDNPDIQDKADHNRAVSLSIPISPDSQVHQDIQGKADNP*ILVNQATRDNQDKEA 289
           DS  H  NP    +  H    S S+P S   +  +++  K +N  +  +Q T+    K++
Sbjct: 72  DSPHHASNPHPNSRQKHQHQTSKSVPRS--QRFSRELNVKKENKKVFSSQTTKRQSRKQS 129


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 319  PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCP 414
            PP  +PS   PP P   +P   P VP P S P
Sbjct: 1022 PPVPLPSADAPPIP---VPSTAPPVPIPTSTP 1050



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +1

Query: 319  PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPANGQSQ 498
            PP   PS  +PP P+       P VP+P S    +  P  +   +    AS  P +    
Sbjct: 1217 PPVPTPSAGLPPVPVPTA--KAPPVPAPSSEAPSVSTP-RSSVPSPHSNASPSPTSSSMA 1273

Query: 499  GYAP 510
              AP
Sbjct: 1274 SAAP 1277



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 298  SSGTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCP 414
            S      PP   PS+++P  P    P   P VP+P   P
Sbjct: 1057 SGAPSAPPPVPAPSSEIPSIP---APSGAPPVPAPSGIP 1092


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 399 SRIMSLLFIKSWK*RYSNERNASILTSRKWTESRIC 506
           SRI+S +F KSWK R+    +     +R   +S +C
Sbjct: 8   SRILSQIFDKSWKVRFEAYESLLHALNRALDDSDVC 43


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 337  STQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPANGQSQGYAP 510
            S   PP P+  +P  +P VP P   P     P ++  A     +S+ P +  S  + P
Sbjct: 1474 SAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSS-VAPATAPSSTLPPSQSSFAHVP 1530


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 185 PISPDSQVHQDIQGKADNP*ILVNQATRDNQDKEAI 292
           PI   S + QD    +D+P    + +T D+Q+++ I
Sbjct: 22  PIGLSSILKQDSSSSSDSPNFFPSSSTNDHQERDTI 57


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -1

Query: 690 RSGAIVSACESVDISIGLTLGTIVLHRYC-----LREVLLCSVHRTPISWTIGNEN 538
           R  A+V  C    + IG+ +GT+ +HRY      LR+++L +  + P    +G  N
Sbjct: 263 RRYALVQRCRDAGV-IGIVIGTLGVHRYLHVLNQLRKMIL-NAGKKPYMLAVGKLN 316


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +2

Query: 92  EHQDNPDSQEHQDNPDIQDKADHNRAVSLSIPISPDSQVHQDIQGKADNP*ILVNQATRD 271
           E Q N     +  +P       H+ A ++   I   SQ HQ   G  D    L+ QA  +
Sbjct: 181 EIQKNSLHTGNTSHPYANASFPHDPANAMGQQID-SSQFHQGAGGLNDRNQHLMRQAMLN 239

Query: 272 NQDKEAIP 295
           NQ +E  P
Sbjct: 240 NQSRETFP 247


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 92  EHQ-DNPDSQEHQDNPDIQDKADHNRAVSLSIPISPDSQVHQDIQ 223
           EH  D+P ++E  D+ DI D    +   SLS  I  D++   D++
Sbjct: 12  EHMNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVE 56


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 71  REHQGSLEHQDNPDSQEHQDNPD 139
           R H+ S +   +P ++ HQD PD
Sbjct: 264 RNHKSSYKRSLSPSTRYHQDRPD 286


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 517 YRTEHILDSVHLRDVRMLAFRSL 449
           Y   H++D  H R +R +A+R +
Sbjct: 322 YNLVHVIDGFHTRSIRRVAWRPI 344


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 59  TQANREHQGS---LEHQDNPDSQEHQDNPDIQDKADHNR 166
           ++A  E QG+   +E +D+ D  E +D  + +D  ++NR
Sbjct: 190 SEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNNNNNR 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,298
Number of Sequences: 5004
Number of extensions: 61138
Number of successful extensions: 251
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)