Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1955
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein. 58 8e-09
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 41 8e-04
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 41 8e-04
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 35 0.051
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 31 1.1
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 3.3
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.3
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ... 29 4.4
Z83236-6|CAB05783.1| 132|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 5.8
AL033514-20|CAA22086.1| 169|Caenorhabditis elegans Hypothetical... 28 5.8
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 28 5.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 5.8
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 28 5.8
AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical ... 28 5.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.7
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 28 7.7
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 28 7.7
>U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein.
Length = 276
Score = 57.6 bits (133), Expect = 8e-09
Identities = 55/177 (31%), Positives = 78/177 (44%), Gaps = 22/177 (12%)
Frame = +2
Query: 2 QDKMDHNKAVSLLNLINPDTQANREHQGSLEHQDNPDS---QEHQDNPDIQDKADH--NR 166
QD+ DH LL+ P+ + +HQ LE Q++ D QE Q+ PD+QD+ DH N+
Sbjct: 83 QDQKDHQDFQDLLD--QPEETEDADHQDQLEDQESKDHREMQEDQEPPDVQDQQDHVENQ 140
Query: 167 AVSLSIPISPDSQVHQDIQGKADNP*ILVNQATR---------DNQDKEAIPSRRELVCS 319
S S S D Q H+D K D P I +Q T ++QD + I R E
Sbjct: 141 EPSTS-QDSQDVQDHKDHAEKPDQPEIQEHQETMERLERTETPEDQDHQGIQERMEFQDK 199
Query: 320 HRHMFHQ------LKCHLSQF--MSYLFHCLSYQVQDHVPAIY*ILEITVQQRTKCK 466
M HQ + HL Q ++ F CL Y+ ++P L + CK
Sbjct: 200 RERMPHQDQMLDIVHAHLVQLTRLNSAFLCLFYKF-SNIPNCVLFLHFFLNCNFTCK 255
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 2 QDKMDHNKAVSLLNLINPDTQANREHQGSLEHQDNPDSQEHQDNPDIQDKADHNRAVSLS 181
QD M+ ++ LL L+ P +E S HQD D ++HQD D+ D+ +
Sbjct: 49 QDTMETMESQELLELLLPSPTIFQEDASSA-HQDVQDQKDHQDFQDLLDQPEETEDADHQ 107
Query: 182 IPI-SPDSQVHQDIQGKADNP*ILVNQATRDNQD 280
+ +S+ H+++Q + P + Q +NQ+
Sbjct: 108 DQLEDQESKDHREMQEDQEPPDVQDQQDHVENQE 141
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +2
Query: 20 NKAVSLLNLINPDTQANREHQ-GSLEHQDNPDSQEHQDNPDIQDKADHNRAVSLSIPISP 196
++ V L+ L + + A++ L+HQD+ + + ++ D + + + L +P SP
Sbjct: 10 SEPVPLVKLDSSNVTADQNPTVAQLDHQDHQERVDRREIQDTMETMESQELLELLLP-SP 68
Query: 197 D------SQVHQDIQGKADN 238
S HQD+Q + D+
Sbjct: 69 TIFQEDASSAHQDVQDQKDH 88
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +2
Query: 53 PDTQANREHQGSLEHQDNPDSQEHQDNPDIQDKADHNRAVSLSIPISPDSQVHQDIQGKA 232
P+TQ R+HQ S EHQ++ D + Q+ + QD DH + D+Q QD +
Sbjct: 97 PETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKT--ELQDNQEPQD-KSAP 153
Query: 233 DNP*ILVNQATRDNQDKE 286
P +Q T+D+Q+ +
Sbjct: 154 SQP----HQGTQDSQESQ 167
Score = 36.3 bits (80), Expect = 0.022
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 86 SLEHQDNPDSQEHQDNPDIQDKADHNRAVSLSIPISP-DSQVHQDIQGKADNP*ILVNQA 262
S HQD P++ E QD D QD +H + P + Q H+D Q D + NQ
Sbjct: 87 SSAHQDQPETPETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKTELQDNQ- 145
Query: 263 TRDNQDKEAIPSR 301
+ QDK A PS+
Sbjct: 146 --EPQDKSA-PSQ 155
Score = 35.1 bits (77), Expect = 0.051
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = +2
Query: 2 QDKMDHNKAVSLLNLINPDTQANREHQG-SLEHQDNPDSQEHQDNPDIQDKADHNRAVSL 178
QD DH + L D Q ++ S HQ DSQE Q+ D QD+ D A+
Sbjct: 127 QDHKDHQEPQDKTEL--QDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQDQTDTQEAL-- 182
Query: 179 SIPISPDSQVHQDIQGKADNP*ILVNQATRDNQDKEAIPSRRELVCS--HRHMFHQLKCH 352
D + HQD + D + Q ++ + + R+L + H+ + +K +
Sbjct: 183 ------DHKDHQDHKEMLDKTELQETQEPQERPESQERTDPRDLAITAHHQELLQDIKRN 236
Query: 353 LSQ 361
S+
Sbjct: 237 FSK 239
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +2
Query: 53 PDTQANREHQGSLEHQDNPDSQEHQDNPDIQDKADHNRAVSLSIPISPDSQVHQDIQGKA 232
P+TQ R+HQ S EHQ++ D + Q+ + QD DH + D+Q QD +
Sbjct: 97 PETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKT--ELQDNQEPQD-KSAP 153
Query: 233 DNP*ILVNQATRDNQDKE 286
P +Q T+D+Q+ +
Sbjct: 154 SQP----HQGTQDSQESQ 167
Score = 37.5 bits (83), Expect = 0.009
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Frame = +2
Query: 2 QDKMDHNKAVSLLNLINPDTQANREHQG-SLEHQDNPDSQEHQDNPDIQDKADHNRAVSL 178
QD DH + L D Q ++ S HQ DSQE Q+ D QD+ D A+
Sbjct: 127 QDHKDHQEPQDKTEL--QDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQDQTDTQEAL-- 182
Query: 179 SIPISPDSQVHQDIQGKADNP*ILVNQATRDNQDKEAIPSRRELVCS--HRHMFHQLKCH 352
D + HQD Q D + Q ++ + + R+L + H+ + +K +
Sbjct: 183 ------DHKDHQDQQEMLDKTELQETQEPQERPESQERTDPRDLAITAHHQELLQDIKRN 236
Query: 353 LSQFMSYLFHCLSY 394
S+ S L +SY
Sbjct: 237 FSK--SLLLILVSY 248
Score = 36.3 bits (80), Expect = 0.022
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 86 SLEHQDNPDSQEHQDNPDIQDKADHNRAVSLSIPISP-DSQVHQDIQGKADNP*ILVNQA 262
S HQD P++ E QD D QD +H + P + Q H+D Q D + NQ
Sbjct: 87 SSAHQDQPETPETQDQRDHQDSQEHQESKDQMDAQEPQEPQDHKDHQEPQDKTELQDNQ- 145
Query: 263 TRDNQDKEAIPSR 301
+ QDK A PS+
Sbjct: 146 --EPQDKSA-PSQ 155
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.051
Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Frame = +1
Query: 307 TGVQPPTY--VPSTQMPPF-PIYVIPFPLPI---VPSPGSC--PCYLLNP-GNNGT---- 447
T V PTY VP P P+Y P P P+ P+P PC NP G GT
Sbjct: 178 TPVYQPTYCAVPPCPAPAATPVYAQPAPRPMPVYAPAPACAQPPCPAYNPYGYQGTPGYA 237
Query: 448 -ATNE----MQASSHPANGQSQGYAPYGIIGFIPVVFVPYCP 558
A N +++ A G +QGYAP G+ P Y P
Sbjct: 238 PAYNPYSYVLRSPVAAAPGYAQGYAPAYAQGYAPAYAPSYAP 279
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 295 VSSGTGVQPPTY--VPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNP 432
+ + VQ PT+ VPS PP YVI P+P + P + + P
Sbjct: 643 IKTENSVQQPTHYIVPSQSSPPPDPYVISNPIPTLSPTAGTPSFNIYP 690
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 53 PDTQANREHQGSLEHQDNPDSQEHQDNPDIQDKADHNRAVSLSIPIS 193
PD + +H+ E Q+ DS + +D D D H A S S P++
Sbjct: 274 PDEKEEEDHEDEREEQEEEDSSDEEDGLDDDDVRRHIPA-STSAPVA 319
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 304 GTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPC 417
G PP P PP P P P+P P P +C C
Sbjct: 238 GCSCLPPPPSPVCMPPPPP--PCPMPIPCPPPPPACSC 273
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 322 PTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNP 432
PT + +MP +P P+P+ P P CP P
Sbjct: 31 PTPMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPP 67
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 319 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNP 432
PP P PP P P P +P P SCPC + P
Sbjct: 67 PPPICPPPPPPPMPCPP---PPPPMPRP-SCPCMMQRP 100
>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
protein R193.2 protein.
Length = 1853
Score = 28.7 bits (61), Expect = 4.4
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Frame = +1
Query: 334 PSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPANGQSQGYAPY 513
P TQ P P +P P+P+V + P T + SS P N + Y
Sbjct: 1069 PPTQQPASPSPTLPGPIPVVKARSVWP----------DITLLVDTSSSPDNAMTDVYFE- 1117
Query: 514 GIIGFIPVVFVPYCPG-NGSAMNTAQQNFP*AVPVQYNCAQCQAN 645
I F+ ++ + Y G GS A + V+Y+C Q N
Sbjct: 1118 KIRTFLDILLIKYSVGEKGSRFTLATFD---GTTVEYSCIFVQTN 1159
>Z83236-6|CAB05783.1| 132|Caenorhabditis elegans Hypothetical
protein K10H10.7 protein.
Length = 132
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 53 PDTQANREHQGSLEHQDNPDSQEHQDNPDIQDKADHN 163
P+ + +E G +N ++++++DN D +D D+N
Sbjct: 89 PERKKKKEDGGDEGDDENKENKDNKDNKDNKDNKDNN 125
>Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical
protein R13.4 protein.
Length = 803
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 523 GFIPVVFVPYCPGNGSAMNTAQQNF 597
G +PV+ P CP NG + T NF
Sbjct: 135 GTLPVLTSPSCPQNGQQLPTENNNF 159
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 301 SGTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHP 480
+ T +PP+ + Q P P+ P P+ +P + P G G QA +P
Sbjct: 586 AATAARPPSTPQAPQAP--PVQAAPAPVQAPQAPQAPP--QAYQGYGGPGGPPQQAYRYP 641
Query: 481 ANGQSQGYAPY 513
Q Q Y+PY
Sbjct: 642 PQ-QGQQYSPY 651
>AL033514-20|CAA22086.1| 169|Caenorhabditis elegans Hypothetical
protein Y75B8A.20 protein.
Length = 169
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 319 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCP 414
PP Q+PP I +IP P +P P CP
Sbjct: 39 PPMCFTEIQLPPIRIPIIPLPRIELPQP-CCP 69
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 313 VQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCP 414
++ PT P+ P P+Y +P P P+ P P P
Sbjct: 479 IRDPT--PTPPPSPQPVYRLPSPKPVTPEPLPSP 510
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 301 SGTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHP 480
+ T +PP+ + Q P P+ P P+ +P + P G G QA +P
Sbjct: 586 AATAARPPSTPQAPQAP--PVQAAPAPVQAPQAPQAPP--QAYQGYGGPGGPPQQAYRYP 641
Query: 481 ANGQSQGYAPY 513
Q Q Y+PY
Sbjct: 642 PQ-QGQQYSPY 651
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 101 DNPDSQE--HQDNPDIQDKADH--NRAVSLSIPISPDSQVHQD 217
D+ D +E Q+N IQ +A H N +SL IP+S + H+D
Sbjct: 684 DDTDQEELVKQENEMIQAQAKHFANILISLQIPLSEEFFEHED 726
>AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical
protein Y47D7A.2 protein.
Length = 119
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 322 PTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQ 465
PT PS PP P Y P P+ P+ S P Y P + ++++ Q
Sbjct: 27 PT-TPSYPTPP-PSYPTPKKYPVAPTYPSTPSYSAPPAQSAYSSSDNQ 72
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 346 MPPFPIYVIPFPLPIVPSPGSCP 414
+PP P V P P P+ P+PG P
Sbjct: 263 VPPPPPSVTPMPPPMPPTPGMTP 285
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 346 MPPFPIYVIPFPLPIVPSPGSCP 414
+PP P V P P P+ P+PG P
Sbjct: 273 VPPPPPSVTPMPPPMPPTPGMTP 295
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Frame = +1
Query: 394 PSPGSCPCYLLN------PGNNGTATNEMQASSHPANGQSQGYAPYGIIGFIPVVFVPYC 555
P+P C C N PG++G + A S NG+ G AP + P + P
Sbjct: 136 PAPQCCTCQQGNAGPPGPPGDDGHDGKDGNAGSDAHNGKDGGVAPSDGLQSEPCMICP-- 193
Query: 556 PGNGSAMNTAQQNFP 600
PG M A + P
Sbjct: 194 PGPQGLMGQAGKKGP 208
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 675 VSACESVDISIGLTLGTIVLHRYCLREVLLCSVHRTPI 562
V CE +++ L + +LHR C ++CS+ P+
Sbjct: 211 VGPCEGIEMGDQLWVSRYILHRICEDYGVVCSLDPKPV 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,726
Number of Sequences: 27780
Number of extensions: 350980
Number of successful extensions: 1402
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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