Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1955
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.54 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.2  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   6.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 275 QDKEAIPSRRELVCSHRHMFHQLKCHLS--QFMSYLFHCLSYQVQDH 409
           Q K   P   E VCS      Q K +++  Q   + F+C  YQ++DH
Sbjct: 574 QFKLGHPEPPESVCSLPCEVGQAKKYVAGEQCCWHCFNCTQYQIRDH 620



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 319 AAHQFPTRRNRLLV 278
           A H +PTR + LLV
Sbjct: 794 AMHHYPTREDNLLV 807


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +1

Query: 430 PGNNGTATNEMQASSHPANGQSQGYAPYGIIGFIPVVFVPYCP---GNGSAMNTAQQNF 597
           P N+G   +  Q     + GQS  ++P  +   +     P  P   G G A  T ++ F
Sbjct: 12  PDNDGKMVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPF 70


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 581 LHNKTSLKQYRCNT-IVPNV 637
           LH+K  +K+ +CN  IV NV
Sbjct: 23  LHHKILIKKNKCNAFIVSNV 42


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -1

Query: 396 WYDRQWKRYDINWE 355
           W ++ W  Y + WE
Sbjct: 80  WVEQSWYDYKLRWE 93


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -1

Query: 396 WYDRQWKRYDINWE 355
           W ++ W  Y + WE
Sbjct: 80  WVEQSWYDYKLRWE 93


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 310  GVQPPTYVPSTQMPPFPIYVIPFPLPIVPSP 402
            G++ P+++      PF  +    P P +PSP
Sbjct: 1143 GIKMPSFMEGMPHLPFTPFNFWNPPPFMPSP 1173


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 4/13 (30%), Positives = 8/13 (61%)
 Frame = -1

Query: 396 WYDRQWKRYDINW 358
           W +++W  Y + W
Sbjct: 72  WVEQEWNDYKLKW 84


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 466 ASSHPANGQSQGYAPYGIIGFIPVVFVPYCPGNGSAM 576
           A + P N  SQ      I+  IPV  VP    N S +
Sbjct: 770 AQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTI 806


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,096
Number of Sequences: 438
Number of extensions: 4632
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)