Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1953
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.3  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   4.0  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   5.3  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 307 NILFETLRRRKVVISSLVDNVTQLLYSIIDLFRF 408
           ++L E      +V+S   D ++ LL S+IDLF F
Sbjct: 96  DLLLEDTEDGSIVVSKF-DRISNLLCSVIDLFEF 128


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/87 (22%), Positives = 36/87 (41%)
 Frame = -3

Query: 648 SQSTNYCATESCKT*NYYWINFARTLSNSVFFIALIGRRAHSPPNGDWFPSPMDPSKSRG 469
           S STN  ++++ +T +   +  A    NS   + L  RR          P+P D   + G
Sbjct: 458 STSTNMASSDALETASMIGVPSAMP-PNSFDMLTLTQRRNRRNNQSSSPPAPSDRRYTMG 516

Query: 468 RAKPLPTKNNIRYISHITDKKSEQVYD 388
             +P+ T+     +  I +     +YD
Sbjct: 517 ARRPVQTRGMTDSVIPILEDPMSTLYD 543


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 525 SPPNGDWFPSPMDPSKSRGRAKPLPTKNNIRYISH 421
           SP +GD+  SP++PS S   + P  + N      H
Sbjct: 171 SPVSGDYSDSPLEPSSSSSFSVPPESLNPTLSFQH 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,859
Number of Sequences: 5004
Number of extensions: 64310
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)