Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1953
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626...    29   3.2  
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892...    29   3.2  
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566...    29   3.2  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    28   7.3  
06_01_0008 + 141405-142421                                             28   9.6  
03_05_0213 - 22037268-22039496                                         28   9.6  

>07_01_0795 -
           6257985-6258149,6258276-6258380,6259196-6259328,
           6260225-6260289,6260569-6261642,6262328-6262433,
           6262872-6263044,6263352-6263765
          Length = 744

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 252 WKQSREIIAYLDGSLNSVTV*T 187
           WK + E+I YLD SL+S++V T
Sbjct: 615 WKTASEMIEYLDSSLSSISVGT 636


>03_05_1014 - 29687343-29687410,29688054-29688191,29689246-29689294,
            29689623-29689728,29690184-29690332,29690840-29690921,
            29691308-29691360,29691644-29691729,29691855-29691909,
            29692179-29692579,29693564-29693660,29694191-29694322,
            29694426-29694476,29694659-29694751,29694917-29694992,
            29695711-29695856,29696009-29696043,29696056-29696107,
            29696290-29696401,29696617-29696813,29697456-29697560,
            29697667-29697819,29698317-29698424,29698608-29698752,
            29699374-29699432,29701397-29701441,29701677-29701730,
            29701901-29702113,29702873-29702958,29704492-29704572,
            29704670-29704729,29705599-29705644,29706212-29706286,
            29706376-29706512,29708306-29708366,29708726-29708743,
            29709710-29709743,29709811-29709902,29709997-29710029
          Length = 1260

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = +2

Query: 458  GLALPLDLLGSMGDGNQSPLGGLCARLPIRAIKKTELLNVRAKLIQ**FQVLHDSVAQXX 637
            G+A  +D++G  GD +Q   G LC RL    I   E ++   K+    +  L    A   
Sbjct: 888  GIAFIVDVMGVDGDLDQCEHGLLC-RLDGGGISSDEDVSAIQKI----WHCLVQQTAALT 942

Query: 638  XXXXXCPRVVGSI-----PTSGKQFVISWFVCTASGCLL 739
                 C R+V  I     PT  K   I W  C AS  LL
Sbjct: 943  NPLRHCLRLVQCIAAAVSPTFLKLLPIGWTACCASPSLL 981


>03_05_0327 - 23154014-23154942,23155169-23155316,23155606-23156622,
            23156753-23157217,23160258-23161247
          Length = 1182

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 479  LLGSMGDGNQSPLGGLCARLPIRAIKKTELLN 574
            L+G   +GN    GG C  L + A+ K ELL+
Sbjct: 1021 LIGPQAEGNMCDFGGSCLPLWVVALAKNELLD 1052


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 540 GRRAHSPPNGDWFPSPMDPSKSRGRAK-PLPTKNNIRYISHITDKKSEQ 397
           GR     PNG   P   +P+  RGR K P P+    +     T K +++
Sbjct: 319 GRHIRCSPNGAAVPESPEPAPRRGRRKSPSPSPPKAKTTRRRTKKNTQE 367


>06_01_0008 + 141405-142421
          Length = 338

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 536 DEHTAHLMAIGSRRPWTPANPEAEPSRCLP 447
           D H AH   +GS RP  PA+  A PS   P
Sbjct: 250 DPHHAH-PTLGSHRPAAPASASASPSPAPP 278


>03_05_0213 - 22037268-22039496
          Length = 742

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 750 ICIDNKHPDAVQT-NQLITNCLPDVGIEPTTLGHNSQSTNYC 628
           +C D K  DA +  NQ+I+      G++P  + +NS  T+YC
Sbjct: 506 LCKDKKIDDAFELINQMISE-----GLQPNNITYNSILTHYC 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,382,072
Number of Sequences: 37544
Number of extensions: 405189
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)