Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1952
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    26   2.0  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    26   2.6  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    25   4.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.1  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    24   8.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   8.0  

>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 144 LEKTTIIMCRICNEEKGEIPIFDNLVHQNIPEEIKHF 254
           L K+ ++  +I  + + EI I  NL H+NI     HF
Sbjct: 120 LHKSELVQSKIEKQVRREIEIQSNLRHKNILRLYGHF 156


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 272 GYSDSRKMFYLLWNIL 225
           G+S+ +KMFY LW+++
Sbjct: 176 GFSNRKKMFYDLWHLI 191


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 52  LLFFSLNQCYWQRPYRTKRKRKYESYGKEEIWRKRQ*LC 168
           L++F      WQ    T +K+KYE   +++I    + LC
Sbjct: 205 LVYFCRGSLPWQGLKATTKKQKYEKIMEKKISTPTEVLC 243


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 6   PTVRHSYFHLISSVMTSI--LLIKSMLLAEALQN 101
           P  R +  HLIS++ TSI  LL+ +  L E+L N
Sbjct: 52  PLSRDAASHLISTIETSIMKLLVVTKELLESLTN 85


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 204 IFDNLVHQNIPEEIKHFSGVTIS 272
           ++DNL+ QN+   ++ FS V +S
Sbjct: 324 LYDNLLEQNLLRVVEPFSRVEVS 346


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 253 FLESLYPKQTICLKKCVKAV 312
           F++   PK+ ICL  CVK V
Sbjct: 657 FMQCHEPKKFICLGDCVKEV 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,732
Number of Sequences: 5004
Number of extensions: 32547
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)