Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1952
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0442 + 29425199-29425274,29425389-29425429,29426097-294261...    27   4.4  
07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491...    27   7.7  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    27   7.7  

>01_06_0442 +
           29425199-29425274,29425389-29425429,29426097-29426166,
           29426251-29426399,29426654-29426749,29426850-29426920,
           29427247-29427308,29427490-29427553,29427630-29427714,
           29427793-29427919,29428092-29428174,29428271-29428331,
           29428534-29428670,29428984-29429280
          Length = 472

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 52  LLFFSLNQCYWQRPYRTKRKRKYESYGKEEIWRKRQ*LCAEYATRKKERFLY 207
           L++F      WQ      +K+KYE   ++++    + LC  Y T     F Y
Sbjct: 203 LMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHY 254


>07_01_0657 -
           4915264-4915386,4915586-4915714,4917773-4917859,
           4918220-4918368,4918498-4918555,4918632-4920614,
           4922064-4922123
          Length = 862

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 258 QKNVLSPLEYSDVQDC 211
           ++N+ SP + SDVQDC
Sbjct: 233 ERNIASPKDLSDVQDC 248


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -1

Query: 266 SDSRKMFYLLWNILMYKIVKYRNLSFFLVAYSAH 165
           S+  ++F L WN +M  +++ +  S+F+ ++  H
Sbjct: 450 SELMQLFGLTWNFIMKYVLRMKEDSYFVPSFPYH 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,869,021
Number of Sequences: 37544
Number of extensions: 169318
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)