Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1952
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...    27   7.0  
Z96048-1|CAB09419.1|  351|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast...    26   9.2  
U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast...    26   9.2  
U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast...    26   9.2  

>Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical
           protein C27C12.6 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 159 IIMCRICNEEKGEIPIFDNLVHQNIPEEIKHFSGVTISKTDNLSK 293
           ++M   C  EK  + +     H N+ + I+HF+ V   K  N  K
Sbjct: 149 LLMTLFCEHEKHVLELVLEACHGNVLQAIEHFANVRRVKNINQMK 193


>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 359 FSDIFL*TLYNHSIIKTALTHFFRQIVCFGYSDSRKMFYLLWNILM 222
           F  +F  ++   S+I   LT +FR + CFG+     + + +  ILM
Sbjct: 170 FFSMFYFSINAGSLISMWLTPYFRSMSCFGHDSCYPLAFGIPAILM 215


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 359 FSDIFL*TLYNHSIIKTALTHFFRQIVCFGYSDSRKMFYLLWNILM 222
           F  +F  ++   S+I   LT +FR + CFG+     + + +  ILM
Sbjct: 170 FFSMFYFSINAGSLISMWLTPYFRSMSCFGHDSCYPLAFGIPAILM 215


>Z96048-1|CAB09419.1|  351|Caenorhabditis elegans Hypothetical
           protein F57A10.1 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 197 DSYI*QSCTSEYSRGDKTFFWS 262
           DS I  SC SEY R  K   W+
Sbjct: 298 DSIIMMSCVSEYGRALKKLIWN 319


>U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform c protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 180 NEEKGEIPIFDNLVHQNIPEEIK 248
           N EKG   +FD +  + IP+E+K
Sbjct: 195 NYEKGHYNVFDQMQWRKIPKELK 217


>U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform b protein.
          Length = 367

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 180 NEEKGEIPIFDNLVHQNIPEEIK 248
           N EKG   +FD +  + IP+E+K
Sbjct: 245 NYEKGHYNVFDQMQWRKIPKELK 267


>U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform a protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 180 NEEKGEIPIFDNLVHQNIPEEIK 248
           N EKG   +FD +  + IP+E+K
Sbjct: 322 NYEKGHYNVFDQMQWRKIPKELK 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,373,418
Number of Sequences: 27780
Number of extensions: 180684
Number of successful extensions: 433
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)