Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1951
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   5.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.2  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   9.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.1  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 378 NKNLIAATHLEIQVEACHCALTCVRPTIIRT 470
           NKN I    L + VE    ALT V P ++R+
Sbjct: 34  NKNNIPNADLGLFVECFRLALTTVNPLLLRS 64


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 456 WGGHTSAHNDTLQP 415
           WGGH S HN  ++P
Sbjct: 31  WGGHVSLHNLRIKP 44


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 426 CHCALTCVRPTIIRTGSSSSAHIRSFKVFT 515
           CH A +C  P  + +   S+  +R++ +FT
Sbjct: 93  CHFAWSCALPCFVDSFFPSNFFLRTYALFT 122


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
 Frame = +2

Query: 314 VVRKSS--ECFLPLTSDV 361
           VV+K+S  ECF+ LTSDV
Sbjct: 140 VVKKASIDECFIELTSDV 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,855
Number of Sequences: 5004
Number of extensions: 38010
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)