Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1951
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0391 + 3015864-3016179,3016933-3017756,3017841-3018107,301...    31   0.57 
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805     30   1.3  
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897           29   2.3  
01_06_0229 - 27709786-27710344,27711513-27711642,27712782-277128...    27   7.0  

>01_01_0391 +
           3015864-3016179,3016933-3017756,3017841-3018107,
           3018505-3018762,3018950-3018997
          Length = 570

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 14  VNCLTGKCLFLSNIKCDIKEFDVT 85
           V C+ G+C FL +++ DIK F+VT
Sbjct: 536 VLCVIGRCKFLKHLELDIKMFNVT 559


>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
          Length = 517

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 HLEIQVEACHCALTCVRPTIIRTGSSSSAHIRSFK 506
           HLE+ ++ C  A  C RPT I T +    HI S +
Sbjct: 382 HLELNIKYCSMAEYCKRPTGIGTQNQRDHHIISLE 416


>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
          Length = 922

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 11  LVNCLTGKCLFLSNIKCDIKEFDVTLGPHRQSAVSRELDALIYNIQLGSRCCGA 172
           L+ C  G  L  +   C+   +D   G  R+ AV +ELD    ++  G+  C A
Sbjct: 117 LLGCRHGLVLIFNYNTCEFLVWDPVSGDRRRVAVPQELDGGERSVMNGAVLCAA 170


>01_06_0229 -
           27709786-27710344,27711513-27711642,27712782-27712869,
           27714070-27714363
          Length = 356

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 509 NFEGPNMGR*TASRPYDGGADTRQRTMTRF---NLYLKVSSSNKIFVNFSSYEHHWLKAR 339
           +F G N     +  PYDG   +  R+  RF    +  +VS+ N   V   SY+++ LK+R
Sbjct: 173 DFWGTNFKIYDSKPPYDGAKASSSRSSRRFGSRRISPQVSAGN-YEVGQVSYKYNLLKSR 231

Query: 338 NTQMIFARL 312
             + ++  L
Sbjct: 232 GPRRMYCAL 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,439,425
Number of Sequences: 37544
Number of extensions: 249182
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)