Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1951
         (525 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76061-1|CAA53661.1| 1139|Homo sapiens 130K protein protein.           31   3.3  
X74594-1|CAA52671.1| 1082|Homo sapiens Rb2/p130 protein protein.       31   3.3  
S67171-1|AAB29227.1| 1139|Homo sapiens p130 protein.                   31   3.3  
BC034490-1|AAH34490.1| 1139|Homo sapiens retinoblastoma-like 2 (...    31   3.3  
BX537767-1|CAD97830.1|  849|Homo sapiens hypothetical protein pr...    30   5.7  

>X76061-1|CAA53661.1| 1139|Homo sapiens 130K protein protein.
          Length = 1139

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 197 LNINSKSLQTEPPSLSSRLVQYLDRQILL*LRT*LFDFKVVRKSSECFLPLTSDVHSL 370
           LN  S +   E   + + L Q+ D+   L + T L   + ++++S C  P+++  HSL
Sbjct: 369 LNAGSGTETAERVQMKNILQQHFDKSKALRISTPLTGVRYIKENSPCVTPVSTATHSL 426


>X74594-1|CAA52671.1| 1082|Homo sapiens Rb2/p130 protein protein.
          Length = 1082

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 197 LNINSKSLQTEPPSLSSRLVQYLDRQILL*LRT*LFDFKVVRKSSECFLPLTSDVHSL 370
           LN  S +   E   + + L Q+ D+   L + T L   + ++++S C  P+++  HSL
Sbjct: 312 LNAGSGTETAERVQMKNILQQHFDKSKALRISTPLTGVRYIKENSPCVTPVSTATHSL 369


>S67171-1|AAB29227.1| 1139|Homo sapiens p130 protein.
          Length = 1139

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 197 LNINSKSLQTEPPSLSSRLVQYLDRQILL*LRT*LFDFKVVRKSSECFLPLTSDVHSL 370
           LN  S +   E   + + L Q+ D+   L + T L   + ++++S C  P+++  HSL
Sbjct: 369 LNAGSGTETAERVQMKNILQQHFDKSKALRISTPLTGVRYIKENSPCVTPVSTATHSL 426


>BC034490-1|AAH34490.1| 1139|Homo sapiens retinoblastoma-like 2
           (p130) protein.
          Length = 1139

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 197 LNINSKSLQTEPPSLSSRLVQYLDRQILL*LRT*LFDFKVVRKSSECFLPLTSDVHSL 370
           LN  S +   E   + + L Q+ D+   L + T L   + ++++S C  P+++  HSL
Sbjct: 369 LNAGSGTETAERVQMKNILQQHFDKSKALRISTPLTGVRYIKENSPCVTPVSTATHSL 426


>BX537767-1|CAD97830.1|  849|Homo sapiens hypothetical protein
           protein.
          Length = 849

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 197 LNINSKSLQTEPPSLSSRLVQYLDRQILL*LRT*LFDFKVVRKSSECFLPLTSDVHSL 370
           LN  S +   E   + + L Q+ D+   L + T L   + ++++S C  P+ +  HSL
Sbjct: 79  LNAGSGTETAERVQMKNILQQHFDKSKALRISTPLTGVRYIKENSPCVTPVPTATHSL 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,868,033
Number of Sequences: 237096
Number of extensions: 1361821
Number of successful extensions: 2409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)