Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1949
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   4.9  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   4.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.5  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.6  

>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 279 LSPYLQPHEASRYVLHNDSLDMVAA 205
           ++ Y++P E     LH D++D VAA
Sbjct: 426 INEYIRPSEEDETKLHQDAVDTVAA 450


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 105 LRVASGTPTPRYINEGGVSLSEDSSNIRSQYQGQLPP-CQDC 227
           +R+A G    ++ N  G +  E+   +  Q +G++PP CQ+C
Sbjct: 314 VRIARGRIEKKFTNVRGKNRIEEQLTLSLQ-EGKIPPYCQNC 354


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 261  VGGMGTNVNA---FPWLARLIYQKSFGCGASLINDRYVVSAAHCLK 389
            V  MG +V +   FP++  LI +  +G G   +   Y+  A  CLK
Sbjct: 1289 VTSMGASVFSPIEFPFVLELIGEFYYGRGHKFLAKSYITRALSCLK 1334


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 199 WYCDRILDESSLSETPPSLIYRGVGVP 119
           W C ++ DESSL E     ++  V +P
Sbjct: 120 WICKQVADESSLIEMLKKPVFSSVVLP 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,907
Number of Sequences: 5004
Number of extensions: 64930
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)