Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1949
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 30 2.2
12_02_0501 + 19742007-19742143,19742253-19742398,19742559-197425... 29 2.9
09_04_0469 + 17864265-17864789,17865648-17865854,17865936-178661... 29 3.9
07_03_0002 - 12236436-12237130,12237603-12237750 29 3.9
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223 29 5.1
10_01_0168 - 1883380-1883594,1884572-1888325 29 5.1
11_04_0024 - 12376642-12377362,12377614-12377849 28 6.8
11_01_0778 + 6496465-6496565,6497072-6497630 28 6.8
06_03_0002 - 15280292-15281550,15282714-15282840 28 6.8
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 28 6.8
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 28 6.8
01_05_0010 + 17112177-17112710 28 6.8
07_01_1052 - 9234506-9235037,9235148-9235849,9236169-9236313,923... 28 9.0
05_07_0124 - 27852840-27853571,27853726-27853769,27854224-278542... 28 9.0
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 28 9.0
03_05_0113 + 20958580-20958703,20958768-20959507 28 9.0
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 120 GTP-TPRYINEGGVSLSEDSSNIRSQYQGQLPPCQDC 227
G P T R + G V L++ ++ QY GQ+P C+DC
Sbjct: 656 GIPVTGRVVTTGAV-LNKSVEDLCFQYLGQVPDCRDC 691
>12_02_0501 +
19742007-19742143,19742253-19742398,19742559-19742596,
19742715-19742765,19743010-19743125,19743348-19743447,
19743537-19743572,19743724-19743774,19743906-19744029,
19744319-19744444,19744572-19744729
Length = 360
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 291 FPWLARLIYQKSFGCGASLINDRYVVSAAHCLKG 392
F WLA ++ +F GAS++ + + A LKG
Sbjct: 176 FIWLALMVASSAFQAGASILKESVFIDGAKRLKG 209
>09_04_0469 +
17864265-17864789,17865648-17865854,17865936-17866175,
17866705-17866771,17866872-17867015,17867202-17867297,
17867818-17867975,17868054-17868190,17868551-17868752
Length = 591
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 573 PVCLPKTPDSLYTGAEAIVA 632
P+CLP P+S+ AEAI+A
Sbjct: 546 PICLPSLPESVAPNAEAIMA 565
>07_03_0002 - 12236436-12237130,12237603-12237750
Length = 280
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 471 VVKVIVHNFNLKELSNDISLIQLSRPIGYSHAIRPVCLPKTPDSLYTGAEAIVAGWGATG 650
V V H +N +EL+ + I+ SR G R V + S + EA GW TG
Sbjct: 102 VPNVRYHLYNCQELTIPLQTIEESRAGGTYRETRSVARNEREGSSSSTTEA---GWEPTG 158
Query: 651 ETGNWS 668
+ W+
Sbjct: 159 DAPGWT 164
>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
Length = 220
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 489 HNFNLKELSNDISLIQLSRPIG-YSHAIRPVCLPKTPDSLYTGAEAIVAGWGATGETGNW 665
H +N EL+ + I+ SR G Y + S T + AGW TG+ W
Sbjct: 74 HLYNCHELTIPLQTIEESRAGGTYRETCNMTRNERESSSSSTPVQMYEAGWAPTGDAPGW 133
Query: 666 S 668
+
Sbjct: 134 T 134
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 492 NFNLKELSNDISLIQLSRPIGYSHAIRPVCLPK 590
N ++KEL DIS++ + + SH IR LPK
Sbjct: 610 NCDIKELPEDISILYHLQTLNVSHCIRLRRLPK 642
>11_04_0024 - 12376642-12377362,12377614-12377849
Length = 318
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 489 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 665
H +N +EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 155 HLYNCRELTIPLQTIEESRTGGAYRETRNMTRNERESSSSSTPVQLYEAGWEPTGDAPGW 214
Query: 666 S 668
+
Sbjct: 215 T 215
>11_01_0778 + 6496465-6496565,6497072-6497630
Length = 219
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 489 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 665
H +N EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 114 HLYNCHELTIPLQTIEESRASGTYRETRNLTRNERESSSSSTPMQMYEAGWAPTGDAPGW 173
Query: 666 S 668
+
Sbjct: 174 T 174
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = -2
Query: 173 IFAKRNSSLIDISRRRSTRSNTQETTKHQQPHF 75
+ K+ + L+D +R+ ++ N+++ TK++ P F
Sbjct: 417 LVTKKQNDLVDRYKRKYSKRNSKKQTKNENPEF 449
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 211 GSCPWYCDRILDESSLSETPPSLIYR 134
G+ P CD + D S TPPSL YR
Sbjct: 186 GTGPGGCDGVEDTQSPFRTPPSLSYR 211
>03_02_0232 +
6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 580 HTGRMACEYPIGRLSCISEMSLLSSLRLKLWT-MTLTT*RVSGV*ERSQRSCSPNFTRNM 404
HT R++C+ + S +SE + LS LR+K M R +R R C N R
Sbjct: 192 HTARLSCDTLVDFWSALSEETRLSLLRMKEEDFMERLMRRFES--KRFCRDCRRNVIREF 249
Query: 403 NHMKPFKQ 380
+K K+
Sbjct: 250 KELKELKR 257
>01_05_0010 + 17112177-17112710
Length = 177
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 489 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 665
H +N EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 86 HLYNCHELTIPVQTIEESRAGGTYRETRNMTRNERESSSSSTPVQMYEAGWAPTGDAPGW 145
Query: 666 S 668
+
Sbjct: 146 T 146
>07_01_1052 -
9234506-9235037,9235148-9235849,9236169-9236313,
9236478-9237069
Length = 656
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 489 HNFNLKELSNDISLIQLSRPIG-YSHAIRPVCLPKTPDSLYTGAEAIVAGWGATGETGNW 665
H +N EL+ + I+ SR G Y + S T + AGW A G+ W
Sbjct: 523 HLYNCHELTIPLQTIEESRVGGAYRETHNMTRNERESSSSSTPVQMYEAGWAAIGDASGW 582
Query: 666 S 668
+
Sbjct: 583 T 583
>05_07_0124 -
27852840-27853571,27853726-27853769,27854224-27854272,
27854753-27854857,27855257-27855366,27857165-27857823,
27858355-27858572
Length = 638
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 193 CDRILDESSLSETPPSLIYRGVGVPEATRKRQQN 92
CD LD+ LSET PS+ G P +T K N
Sbjct: 536 CDDALDDL-LSETSPSVQNEGFAEPGSTSKNDHN 568
>04_04_0605 + 26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 667 DQFPVSPVAPHPATIASAPVYKLS-GVLGRHTGRMACEYPIGRLSCISEMSLLSSLRLKL 491
D F V+ + H + YK++ L +T +A +YP R++C++ + + + + +
Sbjct: 880 DDFKVNLIEAHGWPTGGSSAYKVAKAALNAYTRILAKKYPTLRINCLTPGYVKTDISMHM 939
Query: 490 WTMT 479
+T
Sbjct: 940 GVLT 943
>03_05_0113 + 20958580-20958703,20958768-20959507
Length = 287
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 489 HNFNLKELSNDISLIQLSRPIG-YSHAIRPVCLPKTPDSLYTGAEAIVAGWGATGETGNW 665
H +N EL+ + I+ SR G Y + S T + AGW TG+ W
Sbjct: 200 HLYNCHELTIPLQTIEESRAGGTYRETYNMTRNEQGSSSSSTPVQMYEAGWAPTGDAPGW 259
Query: 666 S 668
+
Sbjct: 260 T 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,628,186
Number of Sequences: 37544
Number of extensions: 444339
Number of successful extensions: 1226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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