Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1949
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   100   2e-23
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.75 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  100 bits (239), Expect = 2e-23
 Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
 Frame = +3

Query: 222 DCHCGERNEKPRVVGGMGTNVNAFPWLARL--IYQKSFGCGASLINDRYVVSAAHCLKGF 395
           +C+CG +N   R+VGG  T +N FP +A +   Y+    CGA++I+ RYV++AAHC+   
Sbjct: 150 NCNCGWKNPS-RIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDE 208

Query: 396 MWFMFRVKFGEHDRCDRSHTPET--RYVVKVIVH-NFNLKELS----NDISLIQLSRPIG 554
                 +  GEHD   ++ T  T    + KVI+H  +++ E      NDI+L++  + I 
Sbjct: 209 NTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIK 268

Query: 555 YSHAIRPVCLP--KTPDSLYTGAEAIVAGWGATGETGNWSCMLLKAELPILSNEEC 716
           +   + P CLP     DS + G++  V GWG T   G  S +L K  L +L+  EC
Sbjct: 269 FGDKVGPACLPFQHFLDS-FAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVEC 323


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 501 LKELSNDISLIQLSRPIGYSHAIRPV 578
           L+EL+ND    +++RP G  ++I P+
Sbjct: 14  LQELTNDCRYDKMTRPPGEINSINPI 39


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 156 VSLSEDSSNIRSQYQGQLPP 215
           VS+S   S +RS   GQLPP
Sbjct: 392 VSMSALVSAVRSPAGGQLPP 411


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 142 IYRGVGVPEATRKRQQNTNNHI 77
           +Y G+ + EA +  QQ TN+ +
Sbjct: 342 VYMGLSMVEAIKYVQQTTNSPV 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,580
Number of Sequences: 438
Number of extensions: 4680
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)