Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1948
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...   186   4e-48
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    34   0.019
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   2.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.2  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   5.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.0  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   6.6  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    26   6.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   8.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   8.8  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   8.8  

>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score =  186 bits (452), Expect = 4e-48
 Identities = 78/170 (45%), Positives = 116/170 (68%)
 Frame = +2

Query: 119 MQHDDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGII 298
           MQ D+V+W ++    CS+++  + Q FCRNEYN+TGLC+R SCPLANS+YAT+RE+NG +
Sbjct: 1   MQQDEVIWQVVGHEFCSYRIKGEAQNFCRNEYNVTGLCNRQSCPLANSRYATVREDNGKL 60

Query: 299 YLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLI 478
           YLYMKT ER  FP+K W+++KLS+N+ KA+ QI++ LLYWP     +CKQR  ++TQYL+
Sbjct: 61  YLYMKTIERAHFPSKLWQRIKLSKNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLL 120

Query: 479 RMRKLKLRRVKELVPIQRKIEKTGEKKRREGFSCCQNR*CNRKTIVREIK 628
           + R+L L+    L+PI+ K       + R+     +      K +V+ +K
Sbjct: 121 KARRLALKHQPALIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLK 170



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +3

Query: 570 ALVAARIDNAIEKQLLERLKKGTYND 647
           AL+AA+++  IEK+L++RLK G Y D
Sbjct: 151 ALIAAKLEKNIEKELVKRLKSGVYGD 176


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 365 SRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQ 469
           +RN EKAI QI+E LL W   +  + +Q F+ +T+
Sbjct: 398 ARNREKAIWQIHEKLLCWERALPIELRQYFIALTE 432


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 275 IREENGIIYLYMKTAERIMFP 337
           IR+E+GII+L  K A+ ++FP
Sbjct: 776 IRDEDGIIHLICKGADTVIFP 796


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 278 LLWHICCWQVDMKIYYIDRSSCTHSDKTAESL*LLYANSV 159
           ++W +CC      I Y+ R  C H D   E++ L  A +V
Sbjct: 128 IMWQLCC-----AIQYLHRQGCVHRDLKLENIFLDKAYNV 162


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 341 KQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKE 514
           KQW K      +E  +H++ E  +     I   C    + + Q ++R R  KL ++KE
Sbjct: 402 KQWHKKDDFTEYEDIVHELIELPVVCAQSIDGGCVYEVINLVQSVLR-RVTKLFQLKE 458


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 376 KVSGQFHFLPLFCWEHYSLSCLHIQINNAIFFSYCGIFAVGKWT*RST 233
           K  GQF  L      HY++S   +Q  N+ FFS   I     +  R T
Sbjct: 262 KYQGQFVALKQTKLTHYAVSIYSVQFLNSTFFSNYSIITDAYFQTRET 309


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 719 RFAFIRYLFCFECSIK-CHLWK 657
           R  F+RYLF  E S+K CH+ K
Sbjct: 350 RSTFLRYLFSDEVSVKVCHVLK 371


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
 Frame = +2

Query: 242 SCPLANSKYATIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAI----HQINENL 409
           S  L++  Y ++        + MK    + +  K   K K    F+ AI      ++E+ 
Sbjct: 291 SITLSDHMYYSLLGVIDYFRVVMKQQYYLQYRPKSTPKEKPLEWFKYAILVVKDSVHESR 350

Query: 410 LYWP-AFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIEK 544
            +W   + K +   R   +  ++IR R L  +  KE + +Q+KIEK
Sbjct: 351 YHWTWKYFKRRRDDRIAYM--HIIRKRYLNEQISKEEIDLQKKIEK 394


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 439 MQTKICEDNTVFDTYEKTQIEESERISTNTA*DRKDG 549
           ++  +  D+  +DT  KTQIE+ E     +    KDG
Sbjct: 419 VKDSLSADDYAYDTKRKTQIEDLEEDQNKSKIASKDG 455


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = -1

Query: 651 RCHCKCLFLISLTIVFLLHYLF-----WQQLKP 568
           R H   L+ +SLTI++ + YLF     W  L+P
Sbjct: 3   RIHKVILYYVSLTILYRVTYLFDLEEPWSTLRP 35


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/98 (22%), Positives = 43/98 (43%)
 Frame = -1

Query: 570 PSLLFFSPVFSILRCIGTNSFTLLNLSFLIRIKYCVIFTNLCLHLALINAGQYNKFSFI* 391
           P  +   P+F + RCI  ++ +   +    R+  C+I  +L + L++ N    N      
Sbjct: 66  PLNVMLLPIFLLCRCICKSNCSPYPILLFTRLYMCLI--SLLIDLSIWNIVPLNARWSAL 123

Query: 390 CIAFSKFLDSFTFSHCFAGNIILSAVFIYK*IMPFSSL 277
            +  S F+ +   +H F  +I    +F +  I+  S L
Sbjct: 124 LLYSSSFMATTFQTHTFTNSI--ETIFFFLTILFLSKL 159


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 203 RNEYNLTGLCSRSSCPLANSKYATIREENGIIYLY 307
           +N  N  G   RSS  LAN ++ T+  +N I  LY
Sbjct: 333 KNFLNFFG--KRSSLSLANFRFHTVEPKNNIAKLY 365


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 1   YVGVFLRLCCLIFCVIHVLEFI 66
           +VG+ +    +I CV+H+L FI
Sbjct: 854 FVGLVITASVIILCVMHLLAFI 875


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 463 YLHKSLFAFSFNKCRPVQ*VFIYLMYCLLKVSGQFHFLPLFCWEHYSLSCLHIQINNAIF 284
           ++ K LFAFS      V    ++    + K  GQF F P+ C    S  CL +     I 
Sbjct: 208 FIAKILFAFSIIFHSGVFSYKLFRAILIRKKIGQFPFGPMQCILVISCQCLIVPATFTII 267

Query: 283 FSY 275
            S+
Sbjct: 268 DSF 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,805
Number of Sequences: 5004
Number of extensions: 60852
Number of successful extensions: 194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)