Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1948
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057... 171 7e-43
07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640... 169 3e-42
02_04_0231 + 21117887-21117935,21118710-21118825,21119049-211191... 30 1.7
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327... 29 4.0
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 29 4.0
03_02_0647 + 10154668-10156041 29 4.0
01_05_0048 - 17561963-17563585 29 4.0
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724... 28 6.9
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 28 6.9
>07_01_1089 +
10004773-10004831,10004924-10005033,10005631-10005749,
10005833-10005930,10006834-10006921,10006993-10007127,
10007211-10007313,10007506-10007618,10007821-10007868
Length = 290
Score = 171 bits (415), Expect = 7e-43
Identities = 77/136 (56%), Positives = 98/136 (72%)
Frame = +2
Query: 128 DDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGIIYLY 307
DDV+W I HCS T FCRN YN TG+C+RSSCPLANS+YATIR+ +GI YLY
Sbjct: 3 DDVIWHCIRHNHCSFMAKITTGIFCRNPYNATGICNRSSCPLANSRYATIRDHDGIFYLY 62
Query: 308 MKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMR 487
MKTAER P K WE+VKL RN+EKA+ IN++L +WP + K KQR K+TQY IRMR
Sbjct: 63 MKTAERAHLPNKLWERVKLPRNYEKAMEVINKHLEFWPKLLVHKIKQRLTKMTQYRIRMR 122
Query: 488 KLKLRRVKELVPIQRK 535
KL+L+ ++++ + RK
Sbjct: 123 KLQLKVREKVMTMPRK 138
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +3
Query: 579 AARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAAL 686
AA+++ IE +L ERLKKG Y DIYN+P FD L
Sbjct: 153 AAQLEKNIESELKERLKKGVYGDIYNYPFKEFDTIL 188
>07_01_1096 -
10063016-10063117,10063530-10063580,10063924-10064033,
10064367-10064454,10064543-10064603,10065198-10065295,
10065394-10065512,10066593-10066702,10066801-10066859
Length = 265
Score = 169 bits (410), Expect = 3e-42
Identities = 76/125 (60%), Positives = 90/125 (72%)
Frame = +2
Query: 128 DDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGIIYLY 307
DDV+W I HCS T FCRN YN TG+C+RSSCPLANS+YATIR+ +GI YLY
Sbjct: 3 DDVIWHCIRHNHCSFMAKITTGIFCRNPYNATGICNRSSCPLANSRYATIRDHDGIFYLY 62
Query: 308 MKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMR 487
MKTAER P K WE+VKL RN+EKAI IN +L +WP + K KQR K+TQY IRMR
Sbjct: 63 MKTAERAHHPNKLWERVKLPRNYEKAIEVINRHLEFWPKLLVHKIKQRLTKMTQYRIRMR 122
Query: 488 KLKLR 502
KL+L+
Sbjct: 123 KLRLK 127
>02_04_0231 +
21117887-21117935,21118710-21118825,21119049-21119144,
21119276-21119332,21119547-21119699,21119801-21119885,
21120022-21120139,21120278-21120442,21120795-21120914,
21121006-21121081,21121247-21121418,21121574-21122049,
21122130-21122320,21124348-21124583,21125799-21125959
Length = 756
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 540 SILRCIGTNSFTLLNLSFLIR-IKYCVIFTNLCLHLALINAGQY 412
++L+C+ S L+N + LI I+ V+F LC + INAG +
Sbjct: 633 TLLQCLILLSRVLVNAALLILYIQRAVLFNGLCFQIHWINAGGF 676
>12_01_0411 +
3276679-3276687,3277430-3277493,3278256-3278297,
3279047-3279063,3280011-3281258
Length = 459
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 642 CKCLFLISLTIVFLLHYLFWQQLKPSLLFFSPVFSILRCIGTNSFTLLNL 493
CK + + +F+ +L W +LKPS L +P F + G N L+ L
Sbjct: 108 CKAWHAMISSPIFINAHLEWSKLKPSSLLMAPGFYQKQKNGQNIAFLMGL 157
>08_02_0204 -
14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +2
Query: 401 ENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIEKTGEKKRREGFSC 580
EN L +P F FV IT + R RR KE + + E R+ GF C
Sbjct: 319 ENALRYPIF-------PFVYITNVMDRQWMYADRRSKEFIDGVHYFLRVAEANRQRGFIC 371
Query: 581 CQNR*CNRK 607
C C +
Sbjct: 372 CPCNKCKNQ 380
>03_02_0647 + 10154668-10156041
Length = 457
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -1
Query: 591 LFWQQLKP--SLLFFSPVFSILRCI 523
+FW Q KP SL +F P+ RCI
Sbjct: 433 IFWVQFKPPFSLQYFGPILFFFRCI 457
>01_05_0048 - 17561963-17563585
Length = 540
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 371 NFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIEKTG 550
N +A+ +I + L W +C+ K T +I R + R+VKE V K+ G
Sbjct: 159 NLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFG 218
Query: 551 EK 556
K
Sbjct: 219 LK 220
>03_02_0300 -
7246312-7246662,7246757-7246831,7246920-7246993,
7247247-7247334,7247464-7247615,7247702-7247861,
7247940-7248095,7248181-7248396,7248808-7249065,
7249816-7250019,7251334-7251423
Length = 607
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 431 KAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIEK 544
K K++ K+T L +R K R+K+ +Q +IEK
Sbjct: 102 KQSLKEQLAKVTPLLEDLRSKKEERIKQFSLVQSQIEK 139
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 340 CWEHYSLSCLHIQINNAIFFSYCGIFAVGK 251
CW+ S CLH+ + I CG F GK
Sbjct: 301 CWDVESGKCLHVYEKSGIGLISCGWFPDGK 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,112,484
Number of Sequences: 37544
Number of extensions: 328838
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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