Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1948
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-4|AAB47596.1|  323|Caenorhabditis elegans Hypothetical pr...   191   5e-49
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    31   0.66 
AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical ...    30   1.5  
U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical p...    30   2.0  
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    29   2.7  
Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z93393-19|CAC70107.3|  971|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z83229-4|CAD89896.1|  971|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U97009-8|AAC69032.1|  534|Caenorhabditis elegans Udp-glucuronosy...    28   6.2  
AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U41534-4|AAB47596.1|  323|Caenorhabditis elegans Hypothetical
           protein C16A3.6 protein.
          Length = 323

 Score =  191 bits (465), Expect = 5e-49
 Identities = 84/151 (55%), Positives = 114/151 (75%), Gaps = 1/151 (0%)
 Frame = +2

Query: 119 MQHDDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGII 298
           MQ DDV W I+NK  C++K  TK + FC+NE NLTGLC+R+SCPLANS+YAT+REENG+ 
Sbjct: 1   MQCDDVTWNILNKGQCAYKAWTKPKMFCKNEMNLTGLCNRASCPLANSQYATVREENGVC 60

Query: 299 YLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLI 478
           YLY K  ER  +P + WEK KLS++  KA+ QI++ LL+W  +++ KCK R ++I QYLI
Sbjct: 61  YLYAKVVERSHYPRRLWEKTKLSKDMNKALEQISDQLLHWSEYVRHKCKARLIRIHQYLI 120

Query: 479 RMRKLKLR-RVKELVPIQRKIEKTGEKKRRE 568
           RMRK+ +R   K+L+PI RK+E+  EK+R E
Sbjct: 121 RMRKMAVRGNQKKLIPIGRKVERR-EKRREE 150



 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 26/39 (66%), Positives = 33/39 (84%)
 Frame = +3

Query: 570 ALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAAL 686
           ALVAA++D+AIEK+LL RLK+GTY D+YNF Q AF+  L
Sbjct: 152 ALVAAKLDHAIEKELLARLKQGTYGDVYNFRQEAFEQML 190


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 356 VKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRK 535
           +  +  FEK + + N+N +   + IK K K+  VK+ + +    K  L +VKE V   +K
Sbjct: 577 ISFNYKFEKTLEKTNKNKIEMKSAIK-KVKEAIVKVEKAIGLSYKYYLEKVKEAVEEVKK 635

Query: 536 I 538
           +
Sbjct: 636 V 636


>AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.6 protein.
          Length = 183

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 492 SFLIRIKYCVIFTNLCLHLALINAGQYNKFSFI*CIAFSKFL 367
           SF + I+ CV      +H   ++A  YN F+F   ++F K L
Sbjct: 48  SFQVSIEVCVRILLSLVHNVFVHASYYNVFNFENLVSFDKLL 89


>U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical
           protein K06C4.17 protein.
          Length = 365

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 356 VKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 475
           + L + FEK IH+IN     WP    A  K  F+K+ QY+
Sbjct: 196 LSLPKFFEKGIHEING----WPWQTNAVEKYTFLKVVQYV 231


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +2

Query: 437 KCKQRFVKITQYLIRMRKLKLRRVKELVPIQRKIEKTGEKKRREGFSCCQNR*CNRKTIV 616
           K K+   ++T ++ RMR  +  +V  +  +Q   +KT  + +  G    Q +  +++T  
Sbjct: 451 KAKEAVAEVTGFIERMRSTRDEKVARIKELQETNQKTAIESQELGHQLLQKQSAHKETTQ 510

Query: 617 RE 622
           R+
Sbjct: 511 RK 512


>Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical
           protein T27E7.8 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = -1

Query: 543 FSILRCIGTNSFTLLNLSFLIRIKYCVIFTNLCL-HLALINAGQYNKFSFI*-CIAFSKF 370
           FS    IG   +  LN+  LI++   +  TN  L  + ++   + +  SF   CI+  K+
Sbjct: 91  FSAFTIIGLAEY--LNIPTLIQLILSITITNAMLVSIIVLFENRSSSISFNKFCISRQKY 148

Query: 369 LDSFTFSHCFAGNIILSAVFIY 304
            + + FS+C +  ++L+  F +
Sbjct: 149 KNFWIFSNCGSSFLVLTPPFFF 170


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -3

Query: 403 FIYLMYCLLKVSGQFHFLPLFCWEHYSLSCLHIQINNAIFFS 278
           F++++  ++K  G F F+  FC   + L+ +H+ I+ ++F S
Sbjct: 333 FVHILKKMMKTVGMFVFI--FCTFWFVLAVVHVSISRSMFSS 372


>Z93393-19|CAC70107.3|  971|Caenorhabditis elegans Hypothetical
           protein Y48E1B.14a protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 591 LFWQQLKPSLLFFSPVFSILRCIGTNSFTLLNLSFLIRI-KYCVIFTNL 448
           LFWQ LK    +  P+FS +R + + +   +  S L  + + C+   NL
Sbjct: 822 LFWQPLKTQFQWALPIFSAIRALCSKTIDSMICSVLGGVFRKCLSVANL 870


>Z83229-4|CAD89896.1|  971|Caenorhabditis elegans Hypothetical
           protein Y48E1B.14a protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 591 LFWQQLKPSLLFFSPVFSILRCIGTNSFTLLNLSFLIRI-KYCVIFTNL 448
           LFWQ LK    +  P+FS +R + + +   +  S L  + + C+   NL
Sbjct: 822 LFWQPLKTQFQWALPIFSAIRALCSKTIDSMICSVLGGVFRKCLSVANL 870


>U97009-8|AAC69032.1|  534|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein12 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 615 TIVFLLHYLFWQQLKPSLLFFSPVF 541
           T +FLL +LF++     +L F+P+F
Sbjct: 5   TFIFLLTFLFFECYSSKILIFNPIF 29


>AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical
           protein ZK185.4 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 329 MFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKL 493
           M   K++E V   R     + Q+N  LL+W  F+       F  +T  ++   K+
Sbjct: 1   MLMEKRFESVHKKRPQAVELFQLNTTLLFWVGFVPPLFAAVFAILTAIILHQDKI 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,208
Number of Sequences: 27780
Number of extensions: 350871
Number of successful extensions: 1100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)