Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1947
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   5.7  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    24   7.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    24   10.0 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   10.0 
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    24   10.0 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   10.0 

>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 75  LLRVTSTV*HSVHRIGYVIPCGH 7
           L  +T  V    ++  Y++PCGH
Sbjct: 104 LCPITRHVMSDTYQFAYIVPCGH 126


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 219 LLSGSRFRFGGRFCEALLLL 278
           +L G  F  GGRFC  +L L
Sbjct: 73  VLVGIAFEIGGRFCGLILTL 92


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 260 RSTALARVSVSNASWFEPRELTY 328
           +ST +A V    ++W  PR L+Y
Sbjct: 358 QSTTVASVKHLGSAWLPPRSLSY 380


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 284 SVSNASWFEPRELTY 328
           SV NASWF+  E  Y
Sbjct: 250 SVQNASWFQTAEYPY 264


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 264 ALLLLGSVLAT-PHGLSPESSPTRYG 338
           +++ L S L T P GL+P   P+R+G
Sbjct: 412 SMVNLSSPLVTSPSGLNPTGRPSRFG 437


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 119  VAPVTVLVKPVARDEAFG 172
            +AP+ VL+  +AR+E FG
Sbjct: 2527 IAPINVLLGLLAREELFG 2544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,930
Number of Sequences: 5004
Number of extensions: 19943
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)