Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1945
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q19S69 Cluster: Telomerase reverse transcriptase; n=3; ...    34   3.1  
UniRef50_Q6ALC0 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q17LK9 Cluster: CRAL/TRIO domain-containing protein; n=...    33   5.4  
UniRef50_Q4YNH9 Cluster: Putative uncharacterized protein; n=4; ...    33   7.1  
UniRef50_A0DG35 Cluster: Chromosome undetermined scaffold_5, who...    33   7.1  

>UniRef50_Q19S69 Cluster: Telomerase reverse transcriptase; n=3;
           Bombyx|Rep: Telomerase reverse transcriptase - Bombyx
           mori (Silk moth)
          Length = 703

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = -3

Query: 719 DPKIYKKLSSLISEQIIMQKVAI*KLFLQRNMLALNIN*NNWIKITDLEISYLHLILKPN 540
           D KI K L S + E+   +   + K   +   +A  ++    IK    E+  LHL+LKPN
Sbjct: 207 DKKISKMLFSNVMEKF--EPYCLGKKIKRNLPIAKRLDLKKLIK----EVPKLHLVLKPN 260

Query: 539 YTCRP 525
           Y CRP
Sbjct: 261 YDCRP 265


>UniRef50_Q6ALC0 Cluster: Putative uncharacterized protein; n=1;
           Desulfotalea psychrophila|Rep: Putative uncharacterized
           protein - Desulfotalea psychrophila
          Length = 652

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 17/49 (34%), Positives = 31/49 (63%)
 Frame = +1

Query: 418 NSPVFIEGQSHKTIDLFERFQHYLTKNQKFFKQVYHGLQV*LGFKMRCK 564
           NSP  +EG+S +   L E  ++Y+   +K+FK++  G Q+ + +K+R K
Sbjct: 397 NSPESMEGRSAREFHLSE--ENYIEFREKYFKKLVDGNQIQVEYKLRRK 443


>UniRef50_Q17LK9 Cluster: CRAL/TRIO domain-containing protein; n=2;
           Culicidae|Rep: CRAL/TRIO domain-containing protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 314

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 11  PYVVWGE-HKIQLEREPVTDXXXXXXXXXXXRETPEIVEKAVADLRTLLK 157
           PY+  G    I ++ E  TD            ETPE VEK++++LR LLK
Sbjct: 11  PYIDLGNGFMIYVQAEEYTDPALKAKAEKELNETPENVEKSLSELRALLK 60


>UniRef50_Q4YNH9 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 946

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 549 ET*LYLQTMINLFEEFLIFC*IMLETLKQVNCFMRLPLYKN-WTIFLFTKNINLPNNYLT 373
           E  +YL  ++  F+ F     ++LE  +  NC   L LYK     + +  N  + NN   
Sbjct: 434 EVCIYLIILLKHFKSFYQLNEVILEIFQNFNCINFLLLYKYICNDYTYIVNYYINNNKFN 493

Query: 372 CIINLIKFRPQ 340
            ++N+I   PQ
Sbjct: 494 LLLNIITIFPQ 504


>UniRef50_A0DG35 Cluster: Chromosome undetermined scaffold_5, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_5,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 543

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 486 IMLETLKQVNCFMRLPLYKNWTIFLFTKNINLPNNYL 376
           IML+ L  + C+ +  +Y NW IF  +K INL   YL
Sbjct: 412 IMLKQLNLLICYTKYNIYDNW-IFNLSKMINLKQKYL 447


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,686,110
Number of Sequences: 1657284
Number of extensions: 11162050
Number of successful extensions: 19208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19203
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)