Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1945
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754...    29   2.8  
07_01_1087 - 9959933-9960212,9960292-9960462,9960545-9961365,996...    28   6.5  
06_02_0289 + 13825103-13825510,13825651-13826112,13826189-138270...    28   8.6  
02_03_0337 + 17898732-17899370,17899516-17899977,17900058-179006...    28   8.6  

>07_03_0589 +
           19773904-19774032,19774224-19774298,19774947-19775444,
           19775898-19776263,19776636-19776727,19776826-19776872,
           19776953-19777014,19778461-19778498,19779354-19779366
          Length = 439

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 456 CFMRLPLYKNWTIFLFTKNINLPNNYLTCIINLIKFR 346
           CF+RL  +KNW  +  + N+ +    LTC+++    R
Sbjct: 92  CFLRL--FKNWKGYTMSWNLTITAQTLTCMVSFNSLR 126


>07_01_1087 -
           9959933-9960212,9960292-9960462,9960545-9961365,
           9961985-9962455
          Length = 580

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 435 YKNWTIFLFTKNINLPNNY 379
           +KNW   LFT+ +NLP+N+
Sbjct: 27  WKNWKSKLFTEFVNLPDNH 45


>06_02_0289 +
           13825103-13825510,13825651-13826112,13826189-13827021,
           13827104-13827274,13828025-13828076
          Length = 641

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 435 YKNWTIFLFTKNINLPNNY 379
           +KNWT  LFT+ +N P+N+
Sbjct: 27  WKNWTSKLFTEFVNPPSNH 45


>02_03_0337 +
           17898732-17899370,17899516-17899977,17900058-17900688,
           17900819-17900888,17900971-17901141,17901221-17901479,
           17901918-17901956,17902900-17902914
          Length = 761

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 435 YKNWTIFLFTKNINLPNNY 379
           +KNW   LFT+ +NLP N+
Sbjct: 106 WKNWKSKLFTEFVNLPGNH 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,621
Number of Sequences: 37544
Number of extensions: 266837
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)