Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1944
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 29 0.99
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 27 2.3
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi... 27 2.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 3.0
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 4.0
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 27 4.0
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 5.3
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 9.3
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 9.3
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.7 bits (61), Expect = 0.99
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -2
Query: 371 YRCVMVYRYKVVRRFVWLLMVSLLMMGIVTDDTLGRHSVP----VGMPW 237
+RC+ V + F+W+L V + + I+T +G + VP V +PW
Sbjct: 311 WRCMAVALEFPITLFLWMLAVYVSFLPIMTRRHIGDYGVPDHVRVKLPW 359
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 39 ALGIVIFLTVGYCQEHNHHG--YTLQTLVKH--DVPQKIKTHHAIPVK 170
AL IVI +TVG+ QE+ L LV H +V + KT H + K
Sbjct: 88 ALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEHIVASK 135
>SPAC1782.05 |||phosphotyrosyl phosphatase activator
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 664 IFLSAVYLTVRMEPSAS*RLYSPFTTSPSRISCW 563
++L VY +++PS S R +SP S + W
Sbjct: 238 MYLGYVYFLNKLKPSVSLRFHSPMIDDISAVKTW 271
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 650 SRQKNQDSTLKLSTPDSQSTRSQFTSTVTTIK 745
S +N DS LKL + + S F +T+ T+K
Sbjct: 659 SFHRNSDSKLKLEPSSKEKSGSMFFNTLRTVK 690
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 312 GEFAHDGYRDGRYFGKTQRARGNALGGSRERMRRG 208
G++ D YR GR + RG +R+ RRG
Sbjct: 203 GDYRRDAYRPGRDDERRYAPRGEYRRNNRDEYRRG 237
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 498 YAYPKYAFEYKIEDPHTGDNKYQHEI 575
Y KYA E I+D HT DN ++ I
Sbjct: 157 YGKTKYAIENIIKDLHTSDNTWRGAI 182
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 169 LTGIAWWVLIFCGTSCFTK 113
+ GIAW LIF SC TK
Sbjct: 31 ILGIAWLFLIFLCCSCLTK 49
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 309 EFAHDGYRDGRYFGKTQRARGNALGGSRERMRRGLHLFHRQAQH 178
E ++ Y RY K+ + ++ SR + R LH ++R A H
Sbjct: 326 EHGNNWYTCNRYEEKSSTSARDSQSKSRASLERYLHYYNRFANH 369
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 613 TRLTAPFVPLNTQPTKKSGFNAEVINSGL 699
T ++PF NTQ T ++ F +VIN +
Sbjct: 797 TASSSPFPSCNTQCTNENSFRIQVINDDI 825
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 425 YVMNWDVVYWS 393
YVMN DVVYW+
Sbjct: 102 YVMNQDVVYWT 112
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 650 SRQKNQDSTLKLSTPDSQSTRSQFTSTVTTIK 745
SR+K K+ TP + +RSQ S V + K
Sbjct: 1256 SRKKPSSKDTKIETPSREQSRSQTASPVKSEK 1287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,628
Number of Sequences: 5004
Number of extensions: 50938
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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