Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1944
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    31   1.0  
02_05_0463 - 29248675-29249391,29250024-29250142,29250276-292504...    29   5.5  
06_03_0647 + 23122074-23122187,23123423-23123488,23124467-231246...    28   7.3  

>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 618 PREDCILLSLHHHRGSRAGT-YCHRCGDLQFCIRKH 514
           P   C+LL  H     RAG   C RC    +C +KH
Sbjct: 132 PSMACLLLDQHEQGKDRAGEKVCSRCRKSSYCSKKH 167


>02_05_0463 -
           29248675-29249391,29250024-29250142,29250276-29250495,
           29250621-29250739,29251013-29251093,29251751-29251802,
           29252392-29252514
          Length = 476

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 324 VVAHGEFAHDGYRDGRYFGKTQRARGNAL-GGSRERMRRGLHLFHRQAQ 181
           VV  G+F +   R G Y+    R RG  L GGSRE      ++  R+A+
Sbjct: 364 VVHFGDFTNSSPRFGAYWVDKSRIRGAFLEGGSREEYEAISNVVRRKAK 412


>06_03_0647 +
           23122074-23122187,23123423-23123488,23124467-23124676,
           23124849-23125060,23125641-23126208
          Length = 389

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 363 RDGVPVQSSEAVRVVAHGEFAHDGYRDGR 277
           RD  P  + E VR+ A G + +DGY +G+
Sbjct: 226 RDHKPSCNREKVRIEASGGYVYDGYLNGQ 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,231,696
Number of Sequences: 37544
Number of extensions: 342161
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)