Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1944
         (783 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein.           31   6.2  
AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein.           31   6.2  
AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein.           31   6.2  
AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with...    31   6.2  
BT009908-1|AAP88910.1|  330|Homo sapiens homeo box C13 protein.        30   8.2  
BC090850-1|AAH90850.1|  330|Homo sapiens homeobox C13 protein.         30   8.2  
BC002754-1|AAH02754.1|  330|Homo sapiens HOXC13 protein protein.       30   8.2  
AK024027-1|BAB14786.1|  146|Homo sapiens protein ( Homo sapiens ...    30   8.2  
AJ438986-1|CAD27941.1|  330|Homo sapiens hypothetical protein pr...    30   8.2  
AF263466-1|AAF73439.1|  330|Homo sapiens HOXC13 protein.               30   8.2  
AF255676-1|AAF67760.1|  330|Homo sapiens homeoprotein C13 protein.     30   8.2  

>AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = +3

Query: 510  KYAFEYKIEDP-HTGDNKYQHEIRDGDVVKGEYSLHEADGSI------RTVKYTADKKIR 668
            +Y  E  ++D  H GD+ + H     ++VKG Y+  ++   I      + V    + K  
Sbjct: 1733 EYELEVLVDDSEHAGDSTHSHRWTSLELVKGTYTTDDSPSDIAEIRLDKVVPLKENVKYA 1792

Query: 669  IQR*SYQLRTLKARGANSPAQSP 737
            ++  +Y  RT    G  +  Q P
Sbjct: 1793 VRLRNYGSRTANGDGGMTTVQCP 1815


>AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = +3

Query: 510  KYAFEYKIEDP-HTGDNKYQHEIRDGDVVKGEYSLHEADGSI------RTVKYTADKKIR 668
            +Y  E  ++D  H GD+ + H     ++VKG Y+  ++   I      + V    + K  
Sbjct: 1733 EYELEVLVDDSEHAGDSTHSHRWTSLELVKGTYTTDDSPSDIAEIRLDKVVPLKENVKYA 1792

Query: 669  IQR*SYQLRTLKARGANSPAQSP 737
            ++  +Y  RT    G  +  Q P
Sbjct: 1793 VRLRNYGSRTANGDGGMTTVQCP 1815


>AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = +3

Query: 510  KYAFEYKIEDP-HTGDNKYQHEIRDGDVVKGEYSLHEADGSI------RTVKYTADKKIR 668
            +Y  E  ++D  H GD+ + H     ++VKG Y+  ++   I      + V    + K  
Sbjct: 1733 EYELEVLVDDSEHAGDSTHSHRWTSLELVKGTYTTDDSPSDIAEIRLDKVVPLKENVKYA 1792

Query: 669  IQR*SYQLRTLKARGANSPAQSP 737
            ++  +Y  RT    G  +  Q P
Sbjct: 1793 VRLRNYGSRTANGDGGMTTVQCP 1815


>AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with Myc
            protein.
          Length = 4641

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = +3

Query: 510  KYAFEYKIEDP-HTGDNKYQHEIRDGDVVKGEYSLHEADGSI------RTVKYTADKKIR 668
            +Y  E  ++D  H GD+ + H     ++VKG Y+  ++   I      + V    + K  
Sbjct: 1733 EYELEVLVDDSEHAGDSTHSHRWTSLELVKGTYTTDDSPSDIAEIRLDKVVPLKENVKYA 1792

Query: 669  IQR*SYQLRTLKARGANSPAQSP 737
            ++  +Y  RT    G  +  Q P
Sbjct: 1793 VRLRNYGSRTANGDGGMTTVQCP 1815


>BT009908-1|AAP88910.1|  330|Homo sapiens homeo box C13 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 8   LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
           L   +  +W  F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330


>BC090850-1|AAH90850.1|  330|Homo sapiens homeobox C13 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 8   LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
           L   +  +W  F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330


>BC002754-1|AAH02754.1|  330|Homo sapiens HOXC13 protein protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 8   LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
           L   +  +W  F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330


>AK024027-1|BAB14786.1|  146|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13965 fis, clone Y79AA1001391, moderately
           similar to HOMEOBOX PROTEIN HOX-A13. ).
          Length = 146

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 8   LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
           L   +  +W  F+NR + + +++S++++P LHST
Sbjct: 115 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 146


>AJ438986-1|CAD27941.1|  330|Homo sapiens hypothetical protein
           protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 8   LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
           L   +  +W  F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330


>AF263466-1|AAF73439.1|  330|Homo sapiens HOXC13 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 8   LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
           L   +  +W  F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330


>AF255676-1|AAF67760.1|  330|Homo sapiens homeoprotein C13 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 8   LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 109
           L   +  +W  F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,502,125
Number of Sequences: 237096
Number of extensions: 2003903
Number of successful extensions: 8210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8210
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)