Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1944
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical ...    33   0.30 
Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical p...    29   2.8  
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    29   3.7  
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    28   8.7  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    28   8.7  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    28   8.7  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    28   8.7  

>AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical
           protein Y87G2A.1 protein.
          Length = 780

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  LTVGYCQEHNHHGYTLQTLVKHDVPQKIKTHHAIPVKTAHV 182
           +T+ YC EH  HGY L+   +H  P+       +PV   +V
Sbjct: 398 VTIDYCLEHQQHGYDLEP--RHFGPRSATNSRGLPVAKDYV 436


>Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 278 DTLGRHSVPVGMPWVVLVSGCGVGFICF 195
           D  G  S P   PWV +V+G   GF CF
Sbjct: 9   DAPGNVSNPEAHPWVSMVNGIERGFTCF 36


>Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 278 DTLGRHSVPVGMPWVVLVSGCGVGFICF 195
           D  G  S P   PWV +V+G   GF CF
Sbjct: 9   DAPGNVSNPEAHPWVSMVNGIERGFTCF 36


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 624 GSIRTVKYTADKKIRIQR*SYQLRTLKARGANSPA 728
           G I TV +  D K+ I   +  LRT K  GAN  A
Sbjct: 543 GDIETVNFNLDVKVNITSGTCTLRTQKKEGANQLA 577


>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
           protein C05A9.1 protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 42  LGIVIFLTVGYCQEHNHH--GYTLQTLVKHDVPQKIKTHHAIPVKTAHVAPVYET 200
           LG+V  +  G CQ    +  G T Q LVK  V   I      PV  AH   ++E+
Sbjct: 70  LGVVFSILTGMCQPFESYTLGETSQVLVK--VTNAINNKTIDPVDLAHAYKLFES 122


>U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 525 YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
           Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 19  YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 64


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 525  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1659 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1704


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 525  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 525  YKIEDPHTGDNKYQHEIRDGDVVKGEYSLHEADGSIRTVKYTADKK 662
            Y+ E P +  ++YQ  IRD  + +  Y+  E   S    +Y  D++
Sbjct: 1760 YRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQ 1805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,541
Number of Sequences: 27780
Number of extensions: 293471
Number of successful extensions: 796
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)