Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1944
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    28   0.085
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 0.085
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 719 IGSSCFESPELITSALNPDFFVGCVFNGTNGAVSLVKTVFSFHYITIA 576
           I +SC  SPE  T +++  +  GCV       V L  TVF    I IA
Sbjct: 159 IPASCCNSPENNTCSISNSYTNGCV-EALKDTVKLAGTVFGSVAIAIA 205


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 505 TPNMLSNTKLKIPTPVTISTS 567
           TPN LS  K+  PTP + + S
Sbjct: 291 TPNFLSEAKIFPPTPGSFNFS 311


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 405 GVLEQQSQLHGL*VRDG 355
           G+L Q  Q HGL V++G
Sbjct: 193 GILSQHPQQHGLGVQNG 209


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 223 LTRTTQGIPTGTLCLPKVSSVTIPIM 300
           + R+ QG  TGT+ L K     IPIM
Sbjct: 211 IIRSIQG--TGTIILKKTVCFVIPIM 234


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 18  TSKMFGKALGIVIFLTVGYCQE 83
           TSK+FG+AL   I  TV +  E
Sbjct: 456 TSKLFGRALSRRIKATVLFATE 477


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 422 VMNWDVVYWSSNHSFMDYRCV 360
           V++W   + S NHS    RC+
Sbjct: 66  VLSWQSKWLSINHSACAIRCL 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,355
Number of Sequences: 438
Number of extensions: 3445
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)