Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1943
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    27   6.2  
Z81070-12|CAB03008.1|  495|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75544-6|CAA99882.1|  495|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF174643-1|AAD51977.1|  495|Caenorhabditis elegans PP2A-B regula...    27   8.1  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      27   8.1  

>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 464 FFKVIQYFFVQFCFANTCLGALSIYK 387
           +F +  +F V FCF   CLG   + K
Sbjct: 12  YFIIFTFFCVTFCFLKLCLGENGVEK 37


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 131 FTSFCLLIKYIKVVSTRCIKFVSSVENSK*VRK*ISLI 244
           FT+ C+ +K +KVV+    K+ S   +S+ ++K   LI
Sbjct: 587 FTTTCVEVKNVKVVTCNQCKYTSQFASSECIKKEHKLI 624


>Z81070-12|CAB03008.1|  495|Caenorhabditis elegans Hypothetical
           protein F26E4.1 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 420 SKTELHKEVLNYLEEMGLDKKLHVIRWM 503
           S  + H+   +YL+ + +D+K++ IRW+
Sbjct: 114 STFQSHEPEFDYLKSLEIDEKINQIRWL 141


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 484 NFLSSPISSR*FNTSLCNSVLLTPVLVLSASI 389
           NF++  + +R F+ S+C   LL P L ++  I
Sbjct: 829 NFIAQIVETRFFSLSICREQLLIPCLQIALDI 860


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 484 NFLSSPISSR*FNTSLCNSVLLTPVLVLSASI 389
           NF++  + +R F+ S+C   LL P L ++  I
Sbjct: 829 NFIAQIVETRFFSLSICREQLLIPCLQIALDI 860


>Z75544-6|CAA99882.1|  495|Caenorhabditis elegans Hypothetical
           protein F26E4.1 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 420 SKTELHKEVLNYLEEMGLDKKLHVIRWM 503
           S  + H+   +YL+ + +D+K++ IRW+
Sbjct: 114 STFQSHEPEFDYLKSLEIDEKINQIRWL 141


>AF174643-1|AAD51977.1|  495|Caenorhabditis elegans PP2A-B
           regulatory subunit PR55/B protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 420 SKTELHKEVLNYLEEMGLDKKLHVIRWM 503
           S  + H+   +YL+ + +D+K++ IRW+
Sbjct: 114 STFQSHEPEFDYLKSLEIDEKINQIRWL 141


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 484 NFLSSPISSR*FNTSLCNSVLLTPVLVLSASI 389
           NF++  + +R F+ S+C   LL P L ++  I
Sbjct: 829 NFIAQIVETRFFSLSICREQLLIPCLQIALDI 860


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,813
Number of Sequences: 27780
Number of extensions: 185622
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)