Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1940
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   7.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   7.0  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    24   9.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 4   TSRPPANKDASGTSSAKSPRT 66
           T  PPA+  ++GTSS+  P T
Sbjct: 315 TPPPPASTSSTGTSSSPLPST 335


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 79  IKRYEMRSLFYLAALCCLVLSAYGNPISRPE 171
           IK+YE ++  +   L CLV  + G P    E
Sbjct: 853 IKKYETKASIFNELLFCLVYISAGQPARAQE 883


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 79  IKRYEMRSLFYLAALCCLVLSAYGNPISRPE 171
           IK+YE ++  +   L CLV  + G P    E
Sbjct: 853 IKKYETKASIFNELLFCLVYISAGQPARAQE 883


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 117 RQIEQRPHLVSFD 79
           R  E++PHL++FD
Sbjct: 469 RNFEEKPHLIAFD 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 969,661
Number of Sequences: 5004
Number of extensions: 15149
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)