Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1940
         (380 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001688-1|AAN71443.1|  235|Drosophila melanogaster RE58281p pro...    29   2.7  
BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p pro...    27   8.2  
AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-P...    27   8.2  

>BT001688-1|AAN71443.1|  235|Drosophila melanogaster RE58281p
           protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = -2

Query: 193 ASPLPYPLQAAR*DSRRLTKRDSITPPNRTTTSS 92
           ASPLP P   A   S R T   SI+P   TTTSS
Sbjct: 168 ASPLPSPPFWACRASARTTTMPSISPCTTTTTSS 201


>BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p
           protein.
          Length = 1312

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 187 PLPYPLQAAR*DSRRLTKRDSITPPNRTTTSSRI 86
           P P+P  AA  +  RL    S++PP   +TSS +
Sbjct: 18  PHPHPRAAAASEVHRLAAGGSVSPPPPPSTSSSL 51


>AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-PA
           protein.
          Length = 1311

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 187 PLPYPLQAAR*DSRRLTKRDSITPPNRTTTSSRI 86
           P P+P  AA  +  RL    S++PP   +TSS +
Sbjct: 18  PHPHPRAAAASEVHRLAAGGSVSPPPPPSTSSSL 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.315    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,073,568
Number of Sequences: 53049
Number of extensions: 179430
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)