Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1940
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical...    27   6.0  

>U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical
           protein K06A1.3 protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 1   ITSRPPANKDASGTSSAKSPRTQQVTIKRYEMRSLFYLAALCCLVLSAYGNPISRPEEDK 180
           I+   PA+ +A   +S++ PRT +  IKR +   +   + +  L  SA+   +  P+E +
Sbjct: 379 ISEGSPAHAEAQHMTSSEGPRTTKREIKRRDATDVDVSSDITILD-SAFAADLPSPQEQQ 437

Query: 181 EVGRQ 195
              ++
Sbjct: 438 SSSQE 442


>AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical
           protein Y48A6B.10 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 199 RPASPLPYPLQAAR*DSRRLTKRDSITPPNRTTTS 95
           RPA   P P+      + RLT  ++ITPP+  +TS
Sbjct: 300 RPAPQKP-PITIMLQSNSRLTANNTITPPSSASTS 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,464,129
Number of Sequences: 27780
Number of extensions: 87593
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)