Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1938
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.67 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.2  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 240 VHPLHHRRARQHLGAVSVLRPQHLRRQRGPAPQAAGA 350
           +HP   ++A+QH G V+      L +Q+  APQ A +
Sbjct: 221 MHPRQQQQAQQHQGVVT----SPLSQQQQAAPQGAAS 253


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 193 LIPADVLRDFPGMCFASTRCITVEP 267
           +IPA++     G C   +  IT+EP
Sbjct: 19  VIPAELTAKLLGNCVRVSPVITIEP 43


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 45  RPVLTAPSVSPSCR 4
           +P  T  SV+PSCR
Sbjct: 89  QPTSTTTSVTPSCR 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,036
Number of Sequences: 438
Number of extensions: 2697
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)