Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1936
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    28   1.3  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    28   1.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.2  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   3.9  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   3.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   6.9  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   6.9  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    25   9.1  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 588 KMKQLFLGLLSVDFHVINFEFNTHIVFFFIKRYT 487
           ++  L L L+S   H INF F++ +  FF  +YT
Sbjct: 182 RVSLLQLYLISWTIHFINFVFHSLLAVFFSSKYT 215


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 391 SSKSIQLCGYEKVANRQSSLRINNII 468
           S K ++ CG+EK+ ++Q  L+   +I
Sbjct: 95  SGKQVEFCGFEKIQSKQRDLKSLRVI 120


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 257  QKTLSSTIVKR-TSFSLAVSSACTTLYFAW 343
            QKT + ++++   ++  A+SS+  +LYFAW
Sbjct: 2018 QKTTACSVIQHIAAYVYAISSSTGSLYFAW 2047


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 560 SNPK--NSCFILYYSLGTDAPDCTVFS*VLN*C 652
           S+P+  N C ILY+S   D  DC      +N C
Sbjct: 244 SSPRFVNRCIILYFSSSEDKSDCLAKKNYVNKC 276


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 275 TIVKRTSFSLAVSSACTTLYFAWAETYSKKDSNYFYTESRQNLFSYV 415
           T+V  TSFS   S +   L   W ET++K D       S    FSYV
Sbjct: 197 TVVLYTSFSQP-SKSDGPLDVRWQETFAKSDLYIKRVVSASQKFSYV 242


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 540  LRENLQKVILKIAVSFCITL*VQTHRIVPFSHKYLIDVIIN 662
            LR+  QK ILK A   C TL    H +V  S      VII+
Sbjct: 1338 LRKKAQKAILKQADVVCATLSGSGHDLVAHSSLNFSTVIID 1378


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 76  TKF*IDLNREFVLRDCSLNKSTKDR 2
           T+  IDL  +F+L+DC   ++T D+
Sbjct: 191 TRIYIDLLNDFLLKDCRKKQATYDK 215


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 322 TGGRNRERKTSSFYYRATKGLLLI 251
           T G+ R R  ++ YYR   G+LL+
Sbjct: 65  TAGQERFRTITTAYYRGAMGILLL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,071
Number of Sequences: 5004
Number of extensions: 62616
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)