Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1934
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 60 6e-10
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 59 1e-09
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 57 4e-09
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 56 1e-08
02_05_0250 + 27153048-27154453,27154546-27154885 31 0.25
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 1.3
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 1.3
05_01_0297 - 2314687-2316021 28 2.3
07_01_0200 + 1433859-1434377 28 3.0
07_01_0196 + 1400708-1401226 28 3.0
07_01_0192 + 1367558-1368076 28 3.0
07_01_0188 + 1334405-1334923 28 3.0
10_01_0357 - 3928646-3928954 27 4.0
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 27 4.0
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 5.3
07_01_0204 + 1476517-1477047 27 5.3
07_01_0202 + 1464905-1465423 27 5.3
06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648,146... 27 5.3
12_01_0034 - 288931-289201,289284-289398,289524-289639,289805-28... 27 7.0
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 7.0
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 60.1 bits (139), Expect = 6e-10
Identities = 25/60 (41%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 DISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 177
DIS+DG+++L+ +NG+ ++DL++P D +L +Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 128 DISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/60 (41%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 DISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 177
DIS+DG+++L+ ++G+ ++DL++P D L Q++T F GK+L+ TV+ + GEE + A+K
Sbjct: 113 DISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/60 (41%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 DISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 177
DIS+DG+++L+ ++G ++DL++P D L TQ++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1431 DISEDGFVSLLTESGGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/61 (39%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 DISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDF-DSGKELLCTVLKSCGEECVIAV 174
DIS+DG+++L+ ++G+ ++DL++P D L Q++ F + GK+++ TV+ + GEE + AV
Sbjct: 96 DISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAV 155
Query: 175 K 177
K
Sbjct: 156 K 156
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 31.5 bits (68), Expect = 0.25
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +1
Query: 34 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTA 189
A GD DL IPD + TQ+ T+ S C V S G C AV A+ +
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 40 NGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKAN 183
N D D I G GTQ D +L +VLKS + CV A KA+
Sbjct: 730 NRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 70 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 156
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 1 DISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 153
D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 93 DCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>07_01_0200 + 1433859-1434377
Length = 172
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 206 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 120
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0196 + 1400708-1401226
Length = 172
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 206 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 120
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0192 + 1367558-1368076
Length = 172
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 206 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 120
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0188 + 1334405-1334923
Length = 172
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 206 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 120
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>10_01_0357 - 3928646-3928954
Length = 102
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +2
Query: 32 WLTMVTCVRTSKSRMVTSAHSCVLTSTAARNCCAPC*NPAVRSASSP 172
W ++ + V SA T+ A C PC NP RS P
Sbjct: 3 WAAAAAATASAAATAVASA----ATAAATERCVTPCSNPTARSIPRP 45
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 115 GKELLCTVLKSCGEECVIAVKANTALDK 198
G+ L+ +L SC EE + V++ +LDK
Sbjct: 338 GRSLISKILVSCSEEILTLVQSTGSLDK 365
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 4 ISDDGYLTLMADNGDLREDLKIP 72
+ DDG + M NGD RE LK P
Sbjct: 92 VKDDGVINSMTRNGDRRELLKGP 114
>07_01_0204 + 1476517-1477047
Length = 176
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3
Query: 206 LVYLSRAVFALTAMT---HSSPQDFSTVHN 126
LV L+ A A+ A T SSPQDF HN
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFLDAHN 37
>07_01_0202 + 1464905-1465423
Length = 172
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3
Query: 206 LVYLSRAVFAL---TAMTHSSPQDFSTVHN 126
LV L+ A A+ TA SSPQDF HN
Sbjct: 9 LVLLAAATLAMEAGTAAAQSSPQDFLDAHN 38
>06_01_0187 +
1458802-1458895,1459004-1459464,1459551-1459648,
1460918-1461487,1461534-1461822,1461904-1462086,
1462204-1462824
Length = 771
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = -3
Query: 323 PLYYYSFFKLNL---YAILCFTFM*ELLIVKN*--KFVNPINAELVYLSRAVF 180
PLY +FF ++ +A L T + LL KFV P+++E+ LSR+ F
Sbjct: 377 PLYISTFFSISYGLGFACLTATVVHVLLFHGRYTDKFVTPVSSEIWQLSRSAF 429
>12_01_0034 -
288931-289201,289284-289398,289524-289639,289805-289939,
290062-290129,290374-290484
Length = 271
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 4 ISDDGYLTLMADNGDLREDLKIP 72
+ DDG + M NGD RE LK P
Sbjct: 89 VKDDGVINSMTRNGDPRELLKGP 111
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 197 LSRAVFALTAMTHSSPQDFSTVHNNSLPL 111
L + + A T T+ SP+ S HN+ LP+
Sbjct: 1062 LKKRIIANTNSTYKSPKQMSKPHNHILPV 1090
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,782,283
Number of Sequences: 37544
Number of extensions: 172600
Number of successful extensions: 482
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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