Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1934
(391 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 49 1e-06
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 46 7e-06
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 1.5
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 1.5
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 2.7
U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 27 6.2
U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine rece... 27 6.2
U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine rece... 27 6.2
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 26 8.2
AF077536-3|ABS19474.1| 510|Caenorhabditis elegans Hypothetical ... 26 8.2
AF077536-2|AAK31410.2| 527|Caenorhabditis elegans Hypothetical ... 26 8.2
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +1
Query: 10 DDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKAN 183
+DG+ +LM ++ +L++DLK+P+GDLG +R + + +L V+ +CGEE ++ K +
Sbjct: 133 EDGFCSLMDPESCELKDDLKMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIS 192
Query: 184 T 186
T
Sbjct: 193 T 193
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 46.4 bits (105), Expect = 7e-06
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Frame = +1
Query: 10 DDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKAN 183
DDGY +LM ++ + ++DLK+PD +LG Q+R ++ + +L V+ + GEE ++ K +
Sbjct: 99 DDGYCSLMDPESCEQKDDLKLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVS 158
Query: 184 T 186
T
Sbjct: 159 T 159
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 38 TMVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 178
T++TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 38 TMVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 178
T++TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 16 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 132
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical
protein W09C3.4 protein.
Length = 296
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 179 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 60
ALT+MT PQ NSL SK + + ++P G+LR
Sbjct: 33 ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 1 DISDDGYLTLMADN-GDLREDLK 66
D+S DGYLTL + N DL D++
Sbjct: 110 DLSSDGYLTLRSKNTNDLPSDIR 132
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
C08B11.3 protein.
Length = 1244
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 143 NPAVRSASSPSKQTQLSTNKPTQHL*G*QTFNFLQSTTLT 262
+P AS+P K++ +NKPT H+ F+ L T T
Sbjct: 1166 SPTSSVASAPMKESTSVSNKPTVHINRMLNFSSLNEKTPT 1205
>U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 9 protein.
Length = 351
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = -3
Query: 326 PPLYYYSFFKL-------NLYAILCFTFM*ELLIVKN*KFVNPINAELVYLSR 189
PPL+Y+ FFKL NL +L F+ L N + V + L ++SR
Sbjct: 47 PPLFYFIFFKLIKSSFHGNLKCVLIGYFVTVLAFTINFQIVGFVQVLLPFISR 99
>U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 8 protein.
Length = 351
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = -3
Query: 326 PPLYYYSFFKL-------NLYAILCFTFM*ELLIVKN*KFVNPINAELVYLSR 189
PPL+Y+ FFKL NL +L F+ L N + V + L ++SR
Sbjct: 47 PPLFYFIFFKLIKSSFHGNLKCVLIGYFVTVLAFTINFQIVGFVQVLLPFISR 99
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 7 SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKELLCTVLKSCGEEC 162
++ GY+ + GDL+ KI D LR D ++ G+ ++K CG++C
Sbjct: 592 ANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLRHAALVKECGDKC 641
>AF077536-3|ABS19474.1| 510|Caenorhabditis elegans Hypothetical
protein C16A11.4b protein.
Length = 510
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 348 GAPRSPSTTSVLLFVF*VKFIRNIMFYI-YVRVVDCKKL 235
GAP +P+TTS+ F + F++ + Y+ ++VDC +L
Sbjct: 370 GAPPAPATTSLRAF---LHFLKGYVDYLESEQLVDCSRL 405
>AF077536-2|AAK31410.2| 527|Caenorhabditis elegans Hypothetical
protein C16A11.4a protein.
Length = 527
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 348 GAPRSPSTTSVLLFVF*VKFIRNIMFYI-YVRVVDCKKL 235
GAP +P+TTS+ F + F++ + Y+ ++VDC +L
Sbjct: 387 GAPPAPATTSLRAF---LHFLKGYVDYLESEQLVDCSRL 422
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,257,796
Number of Sequences: 27780
Number of extensions: 153116
Number of successful extensions: 418
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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