Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1933
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    46   4e-06
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   3.5  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    26   4.7  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   8.2  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 28/107 (26%), Positives = 53/107 (49%)
 Frame = +1

Query: 1    QLINTYNFHLAKATEVSPTVSLLCDMLYESEFESQMWMLYNSCKQLMAVGDAYPSKYNVK 180
            +L+ TY+  +++ TE+    ++  +M Y++ F    +M+++S KQ +  GD Y S +   
Sbjct: 881  ELMATYSVEISEKTELKADFAVPHNM-YDNGFNGLFFMVFDSQKQRVHYGDMYTSSHT-- 937

Query: 181  LEKGDYVLRLNVRHENKSLLEKXXXXXXXXXXXXXXXITMDSYCSRI 321
            LEKG+Y+ +  +   + S LE+               IT+  Y   I
Sbjct: 938  LEKGEYLYKFQLLSVDPSTLERFRNVTLRLTKKLKKPITLPLYADHI 984


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 487 TELVFSERYRTGERVTDGQIQTAYFVGR 404
           T+++F +RY   +++ DG   T Y   R
Sbjct: 13  TQVIFEDRYLVKQKLGDGSFGTVYLAQR 40


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 147 DGHELLAAVVKHPHLRLELRLVQHVAQQRHRGRHLSSLGK 28
           D  +LLAA        LE+R+  +V ++R  G H+ +LGK
Sbjct: 16  DIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGK 55


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 497 PLSDRARL*RTISYRRTCDRRSNSNGLFC 411
           P SD   + RT+   +  +   +SNG+FC
Sbjct: 200 PTSDPGFIDRTMEQLKEIEEMKDSNGMFC 228


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 147 DGHELLAAVVKHPHLRLELRLVQHVAQQRHRGRHLSSLGK 28
           D   LLAA        LE+R+  +V ++R  G H+ +LGK
Sbjct: 17  DIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGK 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,957
Number of Sequences: 5004
Number of extensions: 31753
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)