Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1933
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729...    72   3e-13
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484...    28   6.3  
07_01_0797 - 6267333-6267336,6268400-6268576,6268780-6268826           28   6.3  
05_03_0673 + 16837658-16837810,16837900-16837962,16838088-168382...    27   8.4  
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806...    27   8.4  

>02_05_0226 + 26971851-26972034,26972734-26972834,26972876-26972978,
            26973335-26973477,26973525-26973605,26973929-26974015,
            26974097-26974239,26974746-26974896,26974973-26975095,
            26975362-26975445,26975531-26975718,26976726-26976900,
            26977008-26977129,26977231-26977310,26977532-26977590,
            26977921-26978075,26978680-26978858,26980050-26980162,
            26980243-26980413,26980552-26980680,26980756-26980856,
            26980942-26981059,26981739-26981818,26983230-26983302,
            26983865-26983950,26984025-26984076,26984221-26984352,
            26984560-26984628,26984912-26985004,26985806-26985901,
            26986710-26986808,26986894-26986986,26987459-26987608,
            26988391-26988549
          Length = 1323

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 35/78 (44%), Positives = 51/78 (65%)
 Frame = +1

Query: 13   TYNFHLAKATEVSPTVSLLCDMLYESEFESQMWMLYNSCKQLMAVGDAYPSKYNVKLEKG 192
            TY F L    E+ P V LL + +Y+++FESQ + + +S K + + GD YP+   VKL KG
Sbjct: 891  TYKFKLEDGAEIKPRVPLLNNRIYDNKFESQYYRISDSNKCVYSSGDVYPN--YVKLSKG 948

Query: 193  DYVLRLNVRHENKSLLEK 246
            +Y L+L +RH+N  LLEK
Sbjct: 949  EYTLQLYIRHDNVQLLEK 966


>07_03_0557 +
           19447367-19447517,19447630-19447730,19448359-19448480,
           19448725-19448912,19449000-19449178,19449370-19449711,
           19449795-19449859,19450259-19450317,19450486-19450573,
           19450653-19450722,19450759-19450992,19451072-19451411,
           19451643-19451691,19452690-19452780,19453077-19453442
          Length = 814

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 121 NSCKQLMAVGDAYPSKYNVKLEKGDYVLRLNVRH--ENKSLLE 243
           ++   L + GD+  S+  +K   GD VLRL   H  EN +LLE
Sbjct: 308 DNSNHLYSNGDSPDSEMYIKGSAGDNVLRLGADHPSENLTLLE 350


>07_01_0797 - 6267333-6267336,6268400-6268576,6268780-6268826
          Length = 75

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 396 CEVDGHEVTAGQGRRAELLAGRQCLDPGAVGVHG 295
           C +   E   G+G R E + G +C D   VG  G
Sbjct: 20  CGIASLEAAVGKGWRGEEIEGEECEDDDVVGACG 53


>05_03_0673 +
           16837658-16837810,16837900-16837962,16838088-16838279,
           16838546-16838584,16838994-16839008
          Length = 153

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 64  LLCDMLYESEFESQMWMLYNSC 129
           LL  ++Y   F +++W+L NSC
Sbjct: 81  LLTSLVYAGSFVARLWLLANSC 102


>01_06_1332 -
           36379736-36379909,36380395-36380459,36380534-36380612,
           36380794-36380868,36381106-36381609,36382046-36382246,
           36383033-36383566
          Length = 543

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 141 HELLAAVVKHPHLRLELRLVQHVAQQ 64
           H++     +HPHL  +L   QH+ QQ
Sbjct: 326 HQIAQTQQQHPHLNTQLLQQQHILQQ 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,341,318
Number of Sequences: 37544
Number of extensions: 231922
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)