Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1933
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr...    58   3e-09
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     28   5.7  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
            F21H12.6 protein.
          Length = 1374

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
 Frame = +1

Query: 1    QLINTYNFHLAKATEVSPTVSLLCDMLYESEFESQMWMLYNSCKQLMAVGDAYPSKYNVK 180
            +L+ TY   + K +EV   ++ L   LYES  +  ++ ++ + K  +    +YP ++  K
Sbjct: 877  RLLLTYQLKVQKPSEVQLQLAGLTPYLYESPVDCVLFQIFGANKSFVGASSSYPDRWTQK 936

Query: 181  LEKGDYVLRLNVRHENKSLLEKXXXXXXXXXXXXXXXITMDSYCSRIQALTAGK--KFST 354
            LEKGDY ++  +R+ +  +L+                I++D   S   A T GK  KF+ 
Sbjct: 937  LEKGDYTIQAQIRYPDDQVLQGMKELPLLVHVKLGNKISVDLAASASDA-TLGKECKFAG 995

Query: 355  ASLPSGNLMPVY 390
             +L     M VY
Sbjct: 996  KALLPNQEMTVY 1007


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 229 CSRDGRSDATRNRPFPT 179
           CS DG+S    NRPFPT
Sbjct: 84  CSADGKSCLKDNRPFPT 100


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 229 CSRDGRSDATRNRPFPT 179
           CS DG+S    NRPFPT
Sbjct: 84  CSADGKSCLKDNRPFPT 100


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 402  TGCEVDGHEVTAGQGRRAELLAGRQCLDPGAVGV 301
            T C  DG E     G R+  + G +CL+P   GV
Sbjct: 1117 TKCRHDGVERNCAAGCRSTEVVGLRCLEPRWAGV 1150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,345
Number of Sequences: 27780
Number of extensions: 183421
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)