Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1933
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.9  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   3.9  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   3.9  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   3.9  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   3.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 373 NLMPVYFTARAFRQNKPFEFDRRSHV 450
           NL  ++      R+ K FEF+R SH+
Sbjct: 843 NLQILHLEDNRIRELKGFEFERLSHL 868


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 503 YALQYLACEPPKRNANSKDKEKGK 574
           + +  +AC PP R      KE G+
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGR 408


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 SSWPSGTLIRPSIM*SWKRAI 196
           S+W   TL+RP+ +  W + +
Sbjct: 24  SNWNWNTLLRPNFLDGWYQTL 44


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 SSWPSGTLIRPSIM*SWKRAI 196
           S+W   TL+RP+ +  W + +
Sbjct: 68  SNWNWNTLLRPNFLDGWYQTL 88


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 SSWPSGTLIRPSIM*SWKRAI 196
           S+W   TL+RP+ +  W + +
Sbjct: 68  SNWNWNTLLRPNFLDGWYQTL 88


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 SSWPSGTLIRPSIM*SWKRAI 196
           S+W   TL+RP+ +  W + +
Sbjct: 68  SNWNWNTLLRPNFLDGWYQTL 88


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 117 KHPHLRLELRLVQHVAQQRHRGRH 46
           +HPH++ +    Q  AQQ+H   H
Sbjct: 175 QHPHMQPQQGQHQSQAQQQHLQAH 198


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 456 VRYRSLKTSSVGKWTRTRFSTW 521
           V +RS  T ++  W R  F  W
Sbjct: 336 VHFRSPSTHNMSPWVRQVFLNW 357


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 269 STTGNSCSFSNN 234
           S+  NSC++SNN
Sbjct: 305 SSLSNSCNYSNN 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,880
Number of Sequences: 438
Number of extensions: 2403
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)