Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1929
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    42   0.015
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_Q75F06 Cluster: AAL078Wp; n=2; Saccharomycetaceae|Rep: ...    34   2.9  
UniRef50_A5KZ64 Cluster: Putative uncharacterized protein; n=2; ...    33   5.1  
UniRef50_A0LKW1 Cluster: Adenylate/guanylate cyclase; n=1; Syntr...    33   6.7  
UniRef50_A7P975 Cluster: Chromosome chr3 scaffold_8, whole genom...    33   6.7  
UniRef50_Q8XHB7 Cluster: Glutamate racemase; n=12; Firmicutes|Re...    33   8.9  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 41.9 bits (94), Expect = 0.015
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 604  LIFGRQRLGSAPGIAEVHGRR 666
            ++ GRQRLGSAPGIAEVHGRR
Sbjct: 966  VLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 692 TGHLMVSGYRRPWTSAMPGAEPS-RCLPNIR 603
           T +L+   +R  WTS +PGA+P  RCL N+R
Sbjct: 37  TIYLVDDNHRHSWTSTIPGAQPDHRCLVNLR 67


>UniRef50_Q75F06 Cluster: AAL078Wp; n=2; Saccharomycetaceae|Rep:
           AAL078Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 592

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -1

Query: 687 PPNGEWLPSPMDFSNARG-RAKPLPTKYKVV*RIPPPISHLSIKVDLL-ISFSXXXXXXG 514
           PP+  W+PSP+   N     A  LP KY+      P + HL  KVDL+ ++FS       
Sbjct: 99  PPSAPWMPSPLTVENTVPLLAAKLPKKYE------PQVIHLLKKVDLVTMTFSIVLPVFS 152

Query: 513 YLN-IFVTSTTTRT-GTLYHRFFFLPILVTSTGYFR 412
            L+ +F       T   ++  ++ L  L    GY R
Sbjct: 153 LLHLVFAAPPLNATLVKIWIAYYLLTELSLIAGYHR 188


>UniRef50_A5KZ64 Cluster: Putative uncharacterized protein; n=2;
           Vibrionales|Rep: Putative uncharacterized protein -
           Vibrionales bacterium SWAT-3
          Length = 169

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
 Frame = -3

Query: 478 DWDIVSSIFFSTYSSNID-GLF*IHRASR*AHGAQTGS-VAITGKSRASQNLPPDRKRDL 305
           ++ +V S+FF+ + + +D G++   + +   H A+ G+  AITG+S    +   +R+  +
Sbjct: 33  EFTVVVSLFFALFLTVVDLGIYGFVKLTM-QHSAREGARYAITGRSDLDPDASSNREAAI 91

Query: 304 LRKSDEKRNGLCLWV----NLLVEPF--AASDGFGEDGD 206
           L K  +  +GL   V    N+ VE     A  GFG  GD
Sbjct: 92  LEKISQSSSGLLDKVMDVQNIRVEDVYGNAISGFGGSGD 130


>UniRef50_A0LKW1 Cluster: Adenylate/guanylate cyclase; n=1;
           Syntrophobacter fumaroxidans MPOB|Rep:
           Adenylate/guanylate cyclase - Syntrophobacter
           fumaroxidans (strain DSM 10017 / MPOB)
          Length = 752

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -1

Query: 411 FTELVGELTGLKPGVLPSLARAELRRIYHRIGNATY*ENPTRNAMGCVYGLIYSSSPS 238
           +T++ GEL G + G+L  + R    R+Y  IG A+  EN   NA      L Y+   S
Sbjct: 653 WTQVGGELLGREIGLLRVVGRKNPVRVYEVIGFASTAENDGLNAFASALALYYAGGLS 710


>UniRef50_A7P975 Cluster: Chromosome chr3 scaffold_8, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr3 scaffold_8, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 911

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 120 SEASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPSLAAKGSTSKLTHRH 272
           S   K +++   Y  S +  G +R   Y  PS PN +L  +  TS L  RH
Sbjct: 511 SRIEKRNVLDGTYMPSTAFTGGYRVCAYLDPSEPNHALLKRFFTSSLAARH 561


>UniRef50_Q8XHB7 Cluster: Glutamate racemase; n=12; Firmicutes|Rep:
           Glutamate racemase - Clostridium perfringens
          Length = 260

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = -3

Query: 379 QTGSVAITGKSRASQNLPPDRKRDLLRKSDEKRNGLCLWVNLLVEPFAASDGFGEDGDRY 200
           +TGSV +         L  ++ ++L+ K  E R  + L    LVE   A D  GED   +
Sbjct: 112 ETGSVIVMA---TKATLTQEKFKNLMDKYGEHREVIPLPCPGLVEFIEAGDLEGEDVKNF 168

Query: 199 LRYLKAPLMDRE 164
           LR    P MDRE
Sbjct: 169 LREKLNPYMDRE 180


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,899,307
Number of Sequences: 1657284
Number of extensions: 13200773
Number of successful extensions: 35520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35500
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)