Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1929
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    28   1.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   3.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.0  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 138 SMISHHYGFSRSINGAFRYLKYRSPSSPNPSLAAKGSTSKLTHRHSP 278
           +M+SH  GF+ +IN         SP++P+P +  + ++S+  +R SP
Sbjct: 490 AMLSHQNGFNYNINN-----DGLSPNAPHPPINEQSNSSQPFYRVSP 531


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -2

Query: 128 SFARCLLHFY----FYGATIFNFNYLRIFTVIFLIFF 30
           S  RCLL F+    F+ +  F+F++L   + IF+++F
Sbjct: 111 SLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYF 147


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 359 DGNTPGLSPVSSPTSSVNL 415
           DGN  G+ P S P+S VNL
Sbjct: 593 DGNRDGVHPKSRPSSKVNL 611


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 559 SGFTDLLFLGRLGWWVS*YIRHQYHHADWDIVSSIFF 449
           S FTDL+F G +   +S + + QY   +  I SS F+
Sbjct: 651 SNFTDLVFYGHVDGKISIFSKTQYRFLEL-ITSSSFY 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,739
Number of Sequences: 5004
Number of extensions: 52877
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)