Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1928
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0212 - 14919074-14919433,14919444-14920514                       31   0.70 
06_01_0251 - 1890143-1891180                                           29   2.8  
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634...    28   6.5  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    28   6.5  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    28   8.6  

>11_04_0212 - 14919074-14919433,14919444-14920514
          Length = 476

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 228 TCARRSFEFFGHIARKRGDNLEKLLVTGKVCGRMPRGRNPIRWSDQIRSTLNTSVHVAIH 407
           TCA     +  +IA + G   + +LVTG +    PRG    RW+  + S  + SV  A  
Sbjct: 239 TCAEMEGPYIDYIAAEHG---KPVLVTGPIVPEPPRGELEERWATWLSSFPDNSVVFASF 295

Query: 408 TAE 416
            +E
Sbjct: 296 GSE 298


>06_01_0251 - 1890143-1891180
          Length = 345

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -2

Query: 436 EKKTWLSSAVWIATWTEVLRVERIWSDQRIG----FLP-LGILPHTLPVTSSFSRLS 281
           +K++W++S  W+ TW        +W+    G     LP  G    T P   SF  LS
Sbjct: 51  DKRSWVTSHGWVLTWDPTTLATFLWNPHAAGRRRIVLPSFGQTTTTPPPADSFCALS 107


>08_02_0824 +
           21561699-21562415,21563294-21563362,21563424-21563459,
           21564533-21564600,21565259-21565277,21565662-21565763,
           21566173-21566288,21566501-21566595,21568093-21568264,
           21568413-21568493,21569732-21569801,21570106-21570132
          Length = 523

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 534 PSKSSASQSLPPDRKRDPLGRSGEKLAGMAQE 629
           P  SS+S SLP  R+R P  R G +  G  Q+
Sbjct: 9   PGTSSSSSSLPSRRRRRPPPRLGRRRGGDDQQ 40


>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 433 KKTWLSSAVWIATWTEVLRVER 368
           K+ W+SS++W  TW  +++ +R
Sbjct: 717 KRDWVSSSIWNETWERLMQSKR 738


>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +2

Query: 155 DSLDRT---QSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGKAAGNRQGMRE 325
           DSLDR     S R H   T D N  ++Y +      + T+R + R +     G++     
Sbjct: 278 DSLDRNATKSSSRTHSTLT-DPNFVENYFKYSRLHFIGTWRNRYRKRFSNLLGDKSSKGN 336

Query: 326 NAQRQKSNSLV 358
                K+N+++
Sbjct: 337 RDHSGKNNTII 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,665,550
Number of Sequences: 37544
Number of extensions: 466085
Number of successful extensions: 1499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)