Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1927
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 31 0.25
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 29 0.76
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 2.3
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 3.1
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.1
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 26 5.4
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 26 5.4
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 26 7.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 9.4
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 30.7 bits (66), Expect = 0.25
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +3
Query: 126 NNSLRAKLELGRAVHYTLRCRCVTGTRRRFQQNNCGRRHVRPRLDRRNKL 275
N LR L L H RC VT R N C H P L +RN L
Sbjct: 3 NTGLRKGLALSPITHLLKRCSSVTDNVHRV--NYCYNYHTVPNLSQRNLL 50
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 29.1 bits (62), Expect = 0.76
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 43 EAQKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAV 186
E +KSL K + +D G+ +G A SWN+E + H A+
Sbjct: 168 ETKKSLPKQTIHVHDISGSAMIVLIGESQVKSALSWNNETILLIHNAI 215
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 334 DGVVDYRQIQRDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVL 474
DG V +QR VY +A +FD++ L+ DS D++L
Sbjct: 239 DGAVYVEDVQRTSPILVYRCSNAVNCVQLFDETPLALVCTDSKDAML 285
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 590 SSLSLNCAFIALSKSPLSASISQANKPPNLFRST 489
++L L +F A PL + +SQ+N PP L S+
Sbjct: 260 TNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSS 293
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 454 QTKSNRLYFYRKRTTLERRCQTCTHNC*DLFEFDDNLQ 341
QTK + +R L+ RCQ C H+ + DDNL+
Sbjct: 98 QTKGINEFSKAQRHVLDPRCQICVHS--QRNDGDDNLE 133
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 584 KMNCKSEYHLCAVVIRMSSVTKRARAKRIRLPFEIIDTILQYLDPIS 724
+ +C+++ LC + ++ + +RA I+ +ID +LQ+ PIS
Sbjct: 402 QQSCEAKLLLCTRSL-LAHLDERAPVSTIQDDMSVIDDLLQWKGPIS 447
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 466 SVLGKVKYVDRNKLGGLFAWEIDADNG 546
+++GK+ ++DRN+L DAD+G
Sbjct: 236 AIIGKLDWIDRNQLIDFLLGTQDADSG 262
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 499 NKLGGLFAWEIDADNGDLLNAMNAQFKLKDEL 594
N G WE+D D D + A +++DE+
Sbjct: 295 NCTNGYLTWELDPDEKDPMGKQEAIAEIQDEI 326
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 581 SLNCAFIALSKSPLSASISQANKPPNLFRSTYLTFPNT-ESTLSN-EIKSPLLLSKT 417
S NC F+ S S + K L ++T P + ++T SN + SP L S T
Sbjct: 266 SNNCGFLLPSNSTSIKDLKNVKKGNRLNSPPFITIPQSIKNTNSNFLLSSPSLFSDT 322
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +1
Query: 331 EDGVVDYRQIQRDLNNYVYTFDSAAQASYVFDKSK 435
E+G+ DY+++ + L Y+ D ++F++++
Sbjct: 341 EEGLTDYQRVIKILFEYIRLLDQTNAHKFLFEETR 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,947
Number of Sequences: 5004
Number of extensions: 73793
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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