Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1927
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       65   7e-11
08_02_1114 - 24388807-24388932,24390941-24390970,24391044-243911...    31   0.79 
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870     30   1.8  
06_01_0486 - 3455030-3455770                                           29   5.6  
01_01_0135 + 1231687-1232188,1234489-1234564,1234646-1234743,123...    28   7.4  
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297...    28   9.8  
03_05_0830 + 28034179-28035492                                         28   9.8  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
 Frame = +1

Query: 52  KSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDSNKIIV 231
           +SLD + +M +  +   +       T   AP ++    Y+  Y V + L+ GV ++K+++
Sbjct: 223 RSLDWVNVMAFGLRPPGAAN--ANATAFDAPLYDRASHYSASYGVVSWLDAGVPASKVVM 280

Query: 232 GVAMYGRGWTGVTNYTNGNYFSGTGNGPVS-GTWEDGVVDYRQIQ-------RDLNNYVY 387
           G+ +YGR W       +G        GP   G+   G + Y ++Q       R     + 
Sbjct: 281 GIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAMSYAEVQWLAATATRGSRAVIT 340

Query: 388 TFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADNGDL 552
            +D+A+ ASYV   S GD+ ++FD V  V  K+ +  R  L G F W ++ D+ +L
Sbjct: 341 AYDNASVASYV---SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDDANL 393


>08_02_1114 -
           24388807-24388932,24390941-24390970,24391044-24391100,
           24391231-24391393,24391487-24391614,24391697-24391802,
           24391912-24391991,24392118-24392215,24392491-24392631,
           24392738-24392822,24393556-24393693
          Length = 383

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 157 EELYTTHYAVDALLEQGVDSNKIIVGVAM-YGRGWTGVTNYTNGNYFSGTGNGPVSGTWE 333
           ++ +T     DAL   G++S+ +IVG+       WTG  ++ N +  S    G +S  +E
Sbjct: 39  DDYHTLEQVTDALAHAGLESSNLIVGIDFTKSNEWTGRVSFNNQSLHS---LGHISNPYE 95

Query: 334 DGV 342
             +
Sbjct: 96  QAI 98


>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
          Length = 331

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = +1

Query: 349 YRQIQRDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDRNKLGGLFAWE 528
           YR +  DL  Y  +   AA+  Y      GDL++        GK  +V  +  G L AW 
Sbjct: 62  YRAVAPDLRGYGDSDAPAAELQYTAMHVVGDLVALLDAVVGAGKPVFVVAHDWGALTAWN 121

Query: 529 IDADNGDLLNAM 564
           +     D + A+
Sbjct: 122 LCLFRPDRVRAL 133


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 338 PSSHVPDTGPLPVPEK*LPFV*FVTPVQPRPYMATPT 228
           PS H P T P P P    P+V    P  P PY+  PT
Sbjct: 73  PSCHPPYTPPTPRPPPTPPYVPSPPPYVP-PYIPPPT 108


>01_01_0135 +
           1231687-1232188,1234489-1234564,1234646-1234743,
           1234841-1235355
          Length = 396

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 85  DFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGV 210
           DF+ +  N+D+ Y      P      L TTHY  D ++E GV
Sbjct: 274 DFRNSTVNSDMRYMEWDDPPQMEPHFLNTTHY--DEIVESGV 313


>05_01_0378 +
           2970528-2971008,2971961-2972036,2972108-2972253,
           2972300-2972817
          Length = 406

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 23/85 (27%), Positives = 33/85 (38%)
 Frame = +1

Query: 85  DFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDSNKIIVGVAMYGRGWTG 264
           +F+    N DL Y+     P      L  THY  D +++ G          A   R    
Sbjct: 284 EFRNFTVNNDLRYKAWDNPPQTEPVFLDMTHY--DKMVDSGAP-------FARRFRENES 334

Query: 265 VTNYTNGNYFSGTGNGPVSGTWEDG 339
           + +  +GN     G+GPV G W  G
Sbjct: 335 LLDKIDGNVLGRWGHGPVPGAWCSG 359


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
 Frame = +1

Query: 391 FDSAAQASY--VFDKSKGDLISFDSV----DSVLGKVKYVDRNKLGGLFAWEIDADNGDL 552
           FD   QA    V D S G    F+        +L  VK++   KL G +  EI  D G  
Sbjct: 243 FDQRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEEISQDTGKY 302

Query: 553 LNAMNAQFKLKDEL*KRVSFVCSCY*DVERYKARTSKTHTFTIRNYRHDSAVFGSDF 723
           +  ++   K   E+    + +     DV RY  + S T    I++   +     S+F
Sbjct: 303 VFGVDDTLKTL-EMGAVETLIVWENLDVNRYVLKNSATGETAIKHLNKEQEADQSNF 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,212,447
Number of Sequences: 37544
Number of extensions: 498234
Number of successful extensions: 1472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)