Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1927
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
 Frame = +1

Query: 13  YDKIAVVNYAEAQKSLDKIFLMTYDF-----------KGAWSNTDLGYQTTVYAPSWNSE 159
           +D   +VN       + K F  TY++           KG  ++  L   TT+    W ++
Sbjct: 238 FDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMWGTK 297

Query: 160 E--LYTTHYAVDALLEQGVDSNKIIVG 234
           E    T  Y V+ +LE G   N  + G
Sbjct: 298 ETSTRTDAYTVEIVLEPGTGINVTLKG 324


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 741 PTTFACEIGSKYCRIVSIISNGKRMRFARA 652
           P TF C +     + VS + +GK +    A
Sbjct: 324 PATFTCNVRGNPIKTVSWLKDGKPLGLEEA 353


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +1

Query: 88  FKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDSNKIIV 231
           F G + +T++G +       +N  E   TH  +D      +  +K ++
Sbjct: 295 FNGWYMSTEIGSRDLCDVQRYNLLETIATHMGLDTRTSTSLWKDKAMI 342


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 283 GNYFSGTGNGPVSGTWEDGV 342
           G+Y S +G+ PVS    +G+
Sbjct: 65  GSYDSSSGDSPVSSHSSNGI 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,564
Number of Sequences: 438
Number of extensions: 5165
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)