Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1926
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 201 7e-53
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 106 3e-24
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 105 4e-24
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 91 1e-19
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 91 2e-19
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 88 8e-19
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 87 2e-18
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 87 2e-18
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 86 4e-18
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 86 4e-18
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 85 8e-18
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 79 7e-16
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 76 4e-15
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 76 5e-15
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 68 9e-13
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 65 9e-12
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 65 9e-12
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 60 2e-10
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 53 4e-08
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 48 1e-06
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 7e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.93
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 1.6
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 27 2.1
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 27 2.8
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 27 2.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.9
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 25 8.6
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 201 bits (490), Expect = 7e-53
Identities = 99/170 (58%), Positives = 126/170 (74%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
EMDG+ +KKNVF+IGATNRPD IDPA++RPGRLDQLIY+PLPDE++R +IL+ LR +P+
Sbjct: 626 EMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPV 685
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDE 362
A+DVDL +AK T GFSGADL + QRA KLAI+ +IE +I RE V+ MDE
Sbjct: 686 AEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETGEAPADDVV-MDE 744
Query: 363 EDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 512
+ V ++ R H EEAMK ARRSVSD ++R+YE +A L SRG T F+F
Sbjct: 745 DASVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQF 793
Score = 89.0 bits (211), Expect = 5e-19
Identities = 42/97 (43%), Positives = 60/97 (61%)
Frame = +3
Query: 6 MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPIA 185
MDGM A+ NV ++ ATNRP+ IDPA+ R GR D+ + + +PD R ILR + + +A
Sbjct: 352 MDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLA 411
Query: 186 KDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIE 296
DVDL IA T G+ G+DL +C A IR+ ++
Sbjct: 412 DDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMD 448
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 779
Score = 106 bits (254), Expect = 3e-24
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
E+DG+ + V++I ATNRPDIIDPA+LRPGRLD+ + + LPD R IL+ +++P+
Sbjct: 619 ELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPL 678
Query: 183 AKDVDLSYIAKVTQ--GFSGADLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDM 356
++V+L + + + FSGADL + + A A+R A+ A+I +
Sbjct: 679 HEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFADIASNEPE-------ITQH 731
Query: 357 DEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 470
+P+ ++ A FE A K + SVSD D +KY+ A+
Sbjct: 732 SALEPI-RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768
Score = 71.7 bits (168), Expect = 8e-14
Identities = 36/87 (41%), Positives = 53/87 (60%)
Frame = +3
Query: 27 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPIAKDVDLSY 206
K V +IGATNRPD +D A+ R GR D+ I + +P + +RE ILR + ++ D D
Sbjct: 313 KPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQ 372
Query: 207 IAKVTQGFSGADLTEICQRACKLAIRQ 287
+AK T G+ GADL + A +AI++
Sbjct: 373 LAKQTPGYVGADLKALTAAAGIIAIKR 399
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 105 bits (253), Expect = 4e-24
Identities = 46/100 (46%), Positives = 74/100 (74%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
E+DG+ A +NV ++ ATNRPD+IDPA++RPGRLD+L+Y+ P+ ++R+ I++ K
Sbjct: 673 ELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKF 732
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAE 302
A+DVDL IA+ T+G SGA++ +CQ A +A+ + +EA+
Sbjct: 733 AEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAK 772
Score = 70.5 bits (165), Expect = 2e-13
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 1/161 (0%)
Frame = +3
Query: 6 MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSP-I 182
+DGM V +I ATNRP+ ID A+ RPGRL++ I I +PD+ +R I++ L P
Sbjct: 407 LDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNE 466
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDE 362
D L +A T + GADL + + A AI++ I + ++ S MD D
Sbjct: 467 INDAQLEDLASRTHAYVGADLAAVVREAALRAIKRTI--SLQKDTSGLDIFGAVQMD-DL 523
Query: 363 EDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQS 485
E + + ++ E M +V +DI E Q L++S
Sbjct: 524 EFALSSVRQSAMREFM-MESPNVHWSDIGGQEEVKQKLKES 563
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 91.1 bits (216), Expect = 1e-19
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 7/160 (4%)
Frame = +3
Query: 3 EMDGMGAKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSREAILRANLRK 173
E+D + N VF+IGATNRPD++DP++LRPGR D+L+Y+ + E+S+ ++LRA +
Sbjct: 783 ELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKT 842
Query: 174 SPIAKDVDLSYIAK-VTQGFSGADLTEICQRACKLAI-RQAIEAEIHRERSRXXXXXXXV 347
+ + +DL+ IAK F+GAD+ +C A AI R+ E ++ + S
Sbjct: 843 FKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEIDLLIQASGTDLSTEEF 902
Query: 348 MDMDEEDPVPE--ISRAHFEEAMKFARRSVSDNDIRKYEM 461
+E E I++ F ++K R S+S+ ++ +YEM
Sbjct: 903 FKRNENQDSLELRITKEDFLTSLKKLRPSISEQELHRYEM 942
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 90.6 bits (215), Expect = 2e-19
Identities = 45/94 (47%), Positives = 60/94 (63%)
Frame = +3
Query: 33 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPIAKDVDLSYIA 212
V IGATN P+ +DPA+ RPGR D+ I++PLPD + R AIL + R P+ KDVDLS IA
Sbjct: 407 VVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIA 466
Query: 213 KVTQGFSGADLTEICQRACKLAIRQAIEAEIHRE 314
+ T GF+GADL + +A A + A R+
Sbjct: 467 RGTSGFAGADLANLINQAAVYASKNLSTAVSMRD 500
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 88.2 bits (209), Expect = 8e-19
Identities = 42/95 (44%), Positives = 61/95 (64%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
++DG A KN+ +I ATNR DI+DPA+LRPGR+D+ I P P ++R ILR + R +
Sbjct: 276 QLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNL 335
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 287
+ +DL IA+ G SGA+L +C A A+R+
Sbjct: 336 TRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRE 370
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 87.0 bits (206), Expect = 2e-18
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Frame = +3
Query: 6 MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRK-SPI 182
MDGM ++ V IIGATNRPD +DPA+ RPGR D+ Y PLPD +R+ I+ + R P
Sbjct: 399 MDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPP 458
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHRERSR 323
+ S +A+ ++G+ GADL +C A +I++ +++R R
Sbjct: 459 VPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRTY-PQLYRSTKR 504
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 86.6 bits (205), Expect = 2e-18
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Frame = +3
Query: 6 MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRAN-LRKSPI 182
MDG+ + V +IGATNRP+ +DPA+ RPGR D+ Y PLP++++R IL N L SP
Sbjct: 505 MDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPK 564
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 287
+ L ++A+ T G+ GADL +C A A+R+
Sbjct: 565 IPESYLLHLAESTSGYGGADLKALCTEAALNAVRR 599
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 85.8 bits (203), Expect = 4e-18
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
EMDG + +++ + TNRPD++DPA+LRPGR D+ I I PD RE I + +L+
Sbjct: 426 EMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKA 485
Query: 183 AKDVDL--SYIAKVTQGFSGADLTEICQRACKLAIR 284
A ++DL +A +T GF+GAD+ +C +A R
Sbjct: 486 ADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAAR 521
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 85.8 bits (203), Expect = 4e-18
Identities = 42/104 (40%), Positives = 66/104 (63%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
++DG + V +I ATNR D +DPA+LR GRLD+ + PLP+E++R ILR + RK I
Sbjct: 315 QLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAI 374
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHRE 314
D++ +A+ T ++GA L +C A +A+RQ + +I+ E
Sbjct: 375 DDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQG-DTKINHE 417
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 85.0 bits (201), Expect = 8e-18
Identities = 43/95 (45%), Positives = 59/95 (62%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
+MDG II ATNRPD +DPA+LRPGRLD+ I IPLP+E R IL+ +L K
Sbjct: 262 QMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSK 321
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 287
++D + K+T G +GADL + A +AI++
Sbjct: 322 QGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKE 356
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 78.6 bits (185), Expect = 7e-16
Identities = 37/98 (37%), Positives = 62/98 (63%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
+MDG + V+I+ AT RPD+IDPA+LRPGRLD+LI+ LP+E+ R +L+ + I
Sbjct: 733 QMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHI 792
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIE 296
L ++ +T G++ ADL+ + A +A+ + ++
Sbjct: 793 ENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLK 830
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 76.2 bits (179), Expect = 4e-15
Identities = 35/94 (37%), Positives = 57/94 (60%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPI 182
++DG + N+ ++ ATNRP+ +D A++RPGR+D+ + LPD + R ILR + + I
Sbjct: 309 QLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAI 368
Query: 183 AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIR 284
KD+ IA++ +GA+L +C A AIR
Sbjct: 369 DKDIRWELIARLCPSQTGAELRSVCTEAGMFAIR 402
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 75.8 bits (178), Expect = 5e-15
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSP- 179
+MDG+ N+ +IG TNR D+ID A+LRPGRL+ + I LPDE R IL+ + +
Sbjct: 408 KMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMAS 467
Query: 180 ---IAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIE 296
+ DVD+ +A +T+ FSGA++ + + A A + I+
Sbjct: 468 NGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYRHIK 509
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 68.1 bits (159), Expect = 9e-13
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 EMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP-LPDEKSREAILRANLRKSP 179
+MDG NV +I ATNR D +DPA+LRPGRLD+ I P D + R + + K
Sbjct: 264 QMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKML 323
Query: 180 IAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQA 290
++ +VDL SGA + I Q A LA+R++
Sbjct: 324 LSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKS 360
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 64.9 bits (151), Expect = 9e-12
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +3
Query: 3 EMDGMG-AKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSP 179
++DG +++++ +I ATNR +DPA++RPGR+D+ I PDE ++ I + K
Sbjct: 321 QLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMN 380
Query: 180 IAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 287
+ +DV+L + + SGA++ I A LA+R+
Sbjct: 381 LGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRE 416
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 64.9 bits (151), Expect = 9e-12
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +3
Query: 9 DGM-GAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPIA 185
DG+ + V ++GATNRP ID AI R R+ ++ IPLP+ + R IL L+K P+
Sbjct: 220 DGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLE 277
Query: 186 KDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIE 296
+ D + + T G SG+ + E+C+ A + R+ +
Sbjct: 278 ANFDWNGVVNATAGLSGSYIKEVCRSALSVPRRELFD 314
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 60.5 bits (140), Expect = 2e-10
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Frame = +3
Query: 3 EMDGMGAKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSP 179
+M+G+G ++ V ++GATN P +D AI R R ++ IYIPLP+ +R + N+ K P
Sbjct: 255 QMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIP 312
Query: 180 I-AKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHRE 314
D +AK+T G+SG+D++ + + A +R+ A +E
Sbjct: 313 SELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKE 358
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 52.8 bits (121), Expect = 4e-08
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Frame = +3
Query: 18 GAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSP-IAKDV 194
G V ++ ATN P ID A R R + YIPLP++++R L L +
Sbjct: 521 GHSPRVLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEE 578
Query: 195 DLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHRERSRXXXXXXXVMDMDEEDPV 374
DL + +T+G+SG+D+T + + A +R +A + + +
Sbjct: 579 DLEELVNLTEGYSGSDITALAKDAAMGPLRNLGDALL----------------TTSAEMI 622
Query: 375 PEISRAHFEEAMKFARRSVSDNDIRKYE 458
P IS HF+ +++ R SVS I +YE
Sbjct: 623 PPISLNHFKASLRTIRPSVSQEGIHRYE 650
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 33 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSREAILRANLRKSPIAKDV-DLSYI 209
V ++ ATN P ID A R R + YIPLPDE +R L L+ + + D+ I
Sbjct: 606 VLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLEDIEAI 663
Query: 210 AKVTQGFSGADLTEICQRACKLAIRQAIEA 299
K T+ +SG+DLT + + A +R E+
Sbjct: 664 VKATEYYSGSDLTALAKDAAMGPLRSLGES 693
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI-PLPDEKSREAILRANLRKSPI 182
+DG+ + I TN P+ +DPA++RPGR+D Y+ E+ RE R +
Sbjct: 331 LDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFTRFYGHSPEM 390
Query: 183 AKDV 194
A D+
Sbjct: 391 ADDL 394
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 0.93
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 74 PGHPASRPSGPAHLHPAAGREVPRGHPARQP 166
P P+ PS P L P+A +P G PA P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 227 LQW-R*PDGDMPASLQAGHSPGHRGGDPSREESPAASRR 340
L+W R G + S+ HSP R PS+E S + RR
Sbjct: 25 LEWERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRR 63
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 2 RDGRHGRQEERLH--HRCHKQTGHHRPGHPASRPSGPAHLHPAAGRE 136
R+ H R+ H HR K H R P+SR +G H +E
Sbjct: 20 RETNHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDRSRHERFSKE 66
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +2
Query: 425 LRVRQRHPQVRDVRADPAAEPRLRNQLQIPNKRGSYRGHGYFSGRPAHVPGGG 583
LR HP+V D P+ P I S+R Y +G P GG
Sbjct: 18 LRKNTWHPEVDDSEVPPSVFPEYPVHKAIQKTSDSFRKRNYSAGDYVIAPLGG 70
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 173 FAKVGAQDGLAGLLVRQRDVD-ELVQTAGTQDGRVDDVRSVCG 48
FA + L+ ++++DVD EL++ G G VDD + V G
Sbjct: 187 FANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKG 229
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 102 DQLIYIPLPDEKSREAILRANLRK-SPIAKDVDLSYI 209
D L+ + L D+K REA LR+ K K+ LSY+
Sbjct: 303 DNLVVVNLLDQKGREAPLRSGFEKLCKRNKNPPLSYV 339
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 401 LEVSAANLRNGVFLVHVHNGSGGLLLATPLAMDLRLDGLANGQLAGSLAYL 249
L+ + N+RN L HV +G LA L L +G+ + +LAG++ +L
Sbjct: 12 LQKNQENIRNFTLLAHVDHGK--TTLADSL---LASNGIISSKLAGTVRFL 57
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/47 (19%), Positives = 23/47 (48%)
Frame = +3
Query: 291 IEAEIHRERSRXXXXXXXVMDMDEEDPVPEISRAHFEEAMKFARRSV 431
++A ++ + ++++DE P+PE+ + E+ A + V
Sbjct: 109 VDALVYTSSAGVVFNGADLINVDESQPIPEVHMDAYNESKALAEKQV 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,750
Number of Sequences: 5004
Number of extensions: 41922
Number of successful extensions: 171
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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