Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1925
         (788 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5FDA8 Cluster: Putative uncharacterized protein precur...    34   3.5  
UniRef50_A7DNR0 Cluster: SMC domain protein; n=1; Candidatus Nit...    34   3.5  
UniRef50_A0DZ25 Cluster: Chromosome undetermined scaffold_7, who...    34   4.7  
UniRef50_Q8IBU8 Cluster: Putative uncharacterized protein PF07_0...    33   6.2  
UniRef50_Q4DSD0 Cluster: Putative uncharacterized protein; n=2; ...    33   6.2  
UniRef50_A2EE46 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_A5FDA8 Cluster: Putative uncharacterized protein
           precursor; n=1; Flavobacterium johnsoniae UW101|Rep:
           Putative uncharacterized protein precursor -
           Flavobacterium johnsoniae UW101
          Length = 191

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 499 PTIFIKFSIQGISGVINRSSYNLF--SKNVVLFVFSITNFIDNQLYDSSRHLLANNNTIF 672
           P  +   S+  I+ ++N  + NL   SKN     F     IDN L+   R    N NT  
Sbjct: 5   PFNYFTKSLIVITILVNIMAQNLLAQSKNPSPLNFPTPKNIDNMLFYIQRD--PNTNTAV 62

Query: 673 TALKTQQDGAI*KKNPSKA 729
            AL  Q++G I K NP KA
Sbjct: 63  YALNYQENGKINKSNPIKA 81


>UniRef50_A7DNR0 Cluster: SMC domain protein; n=1; Candidatus
           Nitrosopumilus maritimus SCM1|Rep: SMC domain protein -
           Candidatus Nitrosopumilus maritimus SCM1
          Length = 693

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = -1

Query: 545 ITPEIPCILNFMKIVGAVSEIQIIYTRIARLKV*DTVLMREDDIQCNRFQRQLIISFN-K 369
           I  +I  IL   KI   V +I+I    I+ LKV    +   DDIQ N F R   ++ + +
Sbjct: 488 IDQQIGAILE--KISKGVEQIKIFENAISELKVVKEYVTNLDDIQNNVFSRDGPVATSLR 545

Query: 368 CWMVLDVSPKIS---LILSHVIQLIDNSRKKRPVS 273
            W +  +S K S    +L+  IQ I  + K R +S
Sbjct: 546 SWALNAISAKASEYLALLNTKIQRIQLTEKTRDIS 580


>UniRef50_A0DZ25 Cluster: Chromosome undetermined scaffold_7, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_7,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 455

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -2

Query: 226 NLTYQSESNLYYVNGTLEFRKYYQIFHSIFSWTIPGTINNFITFLIKNINAIKTSITRPK 47
           N+ YQ    + YV  +L    Y   + S F W I  T+N  I  +  N N +K   T P 
Sbjct: 336 NIAYQ----MTYVVSSLWHGFYIGYYFSFFQWAIMNTVNKAIFRVSCNTNYLKIFETNP- 390

Query: 46  RSKYIFWY 23
            +K + WY
Sbjct: 391 LAKIVRWY 398


>UniRef50_Q8IBU8 Cluster: Putative uncharacterized protein PF07_0061;
            n=2; cellular organisms|Rep: Putative uncharacterized
            protein PF07_0061 - Plasmodium falciparum (isolate 3D7)
          Length = 2206

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
 Frame = -2

Query: 289  KNDQ*ASLRNKLLLKYKYVRINLTYQSES---NLYYVNGTLEFRKYYQIFHSIFSWTIPG 119
            +N+Q  +   KL+++Y   R   T+  ++   N+YYVN   ++ +Y + F S  + T  G
Sbjct: 781  RNEQTDTFLQKLIMEYYDERKRRTFFDDTIKGNIYYVN---DYEEYREEFES--NRTKIG 835

Query: 118  TINNFITFLIKNINAIKTSITRPKRSKY 35
             + NF  F++ N   + ++ T    +KY
Sbjct: 836  DLQNFDKFILPNQFILSSNETDINENKY 863


>UniRef50_Q4DSD0 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 943

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = -2

Query: 241 KYVRINLTYQSESNLYYVNGTLEFRKYYQIFHSIFSWTIPGTINNFITFLIKNINAIKTS 62
           +Y+R      +  +L  ++  +EF K+YQ+ H +FS + P   N  I  ++++       
Sbjct: 671 RYLRNTCGVSNLQHLRSLHQCMEFEKFYQLVHPLFSVSTPTLENAAILIILESAALWAVC 730

Query: 61  ITRPKRSKYIF 29
           +    R  Y+F
Sbjct: 731 LVFHLRCSYLF 741


>UniRef50_A2EE46 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1403

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 374  NKCWMVLDVSPKISLILSHVIQLIDNSRKKRPVS 273
            N  W+   +  K++ I+ H++ +  NSRKKRP++
Sbjct: 1005 NLFWIFPLMKSKVTAIIRHILDITRNSRKKRPIA 1038


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,093,186
Number of Sequences: 1657284
Number of extensions: 14761168
Number of successful extensions: 32141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32135
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)