Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1925
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   3.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   5.4  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.4  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   7.1  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   9.4  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.4  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 298 ILEKNDQ*ASLRNKLLLKYKYVRINLTYQSESNLYYVNGTLEFRKYYQIFHSIFSWTIPG 119
           I++K      L  K L ++   + N+++   +  + VNG L++RK +Q +  ++ +   G
Sbjct: 229 IVQKFSAIGGLIKKALNEFSLYKTNISFYLSN--FIVNGVLQYRKEFQRWLRLYEFRRFG 286

Query: 118 TI--NNFI 101
            I  +NF+
Sbjct: 287 LIGLSNFV 294


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 154 IFHSIFSWTIPGTINNFI 101
           I HSIF +T+P  I+N +
Sbjct: 354 ILHSIFEYTVPEAIDNIV 371


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 244 ILIIVYFLSWLTGRFFLELSISCITCDKIKLILG-LTSRTIQHLL 375
           I  +VYF     G  F+E  +S ++ +++K+++G L   TI +LL
Sbjct: 604 IAFLVYFSKPKKGSTFMEKFLSLLSINQLKIVVGSLFMFTICNLL 648


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 414 DIVFSH*NCILYL*TSNSCIYNLNLGNG 497
           D+ + + NC LYL  +   +Y LNL  G
Sbjct: 140 DLKYHYPNCDLYLAAAGDEVYRLNLEQG 167


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 211 SESNLYYVNGTLEFRKYYQIFHSIFSWTIPGTINNFITFLIKNINAIKTSITRP 50
           S S   + NG  EF  + Q    +FS     T  + I   +K+ N++  S+  P
Sbjct: 407 SFSQSLFSNGNYEFAAHSQELDDLFSQITDFTSTDPIASSLKDANSLGPSLLEP 460


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 569 NKL*LDRFITPEIPCILNFMKIVGAVSEIQIIY 471
           N L +++ I P++ C LN  ++ G V+   I +
Sbjct: 759 NILHIEQSIEPDVACYLNHWEVAGCVASTLIYH 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,997
Number of Sequences: 5004
Number of extensions: 69644
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)