Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1925
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_12451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_37151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 181 YHSHSIN*I---HFGKLS*YVHICILIIVYFLSWLTGRFFLELSI 306
           + SH+I  I    FG+++   ++   ++  + SW+TG  FLEL +
Sbjct: 39  FRSHAIERIPTGRFGEINEIANLAAYLVSDYASWITGEQFLELQL 83


>SB_12451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 607 NFIDNQLYDSSRHLLANNNTIFTALKTQQDGAI*KKNPSKARSSPSNLKLTN 762
           +F++ Q      H   ++  IF  L + ++ ++  +NP   RSS S+L  T+
Sbjct: 46  DFLEQQGLPYRHHRSRSSPAIFAGLNSWKNESLMDRNPDSTRSSSSSLSSTS 97


>SB_37151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 187 NGTLEFRKYYQIFHSIFSWTIPGTINNFITF 95
           N + + R +Y+ F S+F+W  P T+    TF
Sbjct: 18  NASFDSRPHYR-FRSVFAWIQPSTLTRIQTF 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,217,981
Number of Sequences: 59808
Number of extensions: 439506
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)